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Protein

Uncharacterized protein YcgV

Gene

ycgV

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

  • cell adhesion involved in biofilm formation Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G6629-MONOMER.
ECOL316407:JW1193-MONOMER.

Protein family/group databases

TCDBi1.B.12.2.6. the autotransporter-1 (at-1) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YcgV
Gene namesi
Name:ycgV
Ordered Locus Names:b1202, JW1193
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13903. ycgV.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 955955Uncharacterized protein YcgVPRO_0000204729Add
BLAST

Proteomic databases

PaxDbiP76017.
PRIDEiP76017.

Interactioni

Protein-protein interaction databases

BioGridi4260897. 218 interactions.
IntActiP76017. 2 interactions.
STRINGi511145.b1202.

Structurei

3D structure databases

ProteinModelPortaliP76017.
SMRiP76017. Positions 669-955.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini687 – 955269AutotransporterPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 autotransporter (TC 1.B.12) domain. [View classification]PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105I1J. Bacteria.
COG3468. LUCA.
HOGENOMiHOG000009435.
OMAiNFLNIGY.
PhylomeDBiP76017.

Family and domain databases

Gene3Di2.160.20.20. 1 hit.
2.40.128.130. 1 hit.
InterProiIPR005546. Autotransporte_beta.
IPR006315. OM_autotransptr_brl.
IPR012332. P22_tailspike_C-like.
IPR011050. Pectin_lyase_fold/virulence.
IPR004899. Pertactin_central.
IPR003991. Pertactin_virulence_factor.
[Graphical view]
PfamiPF03797. Autotransporter. 1 hit.
PF03212. Pertactin. 1 hit.
[Graphical view]
PRINTSiPR01484. PRTACTNFAMLY.
SMARTiSM00869. Autotransporter. 1 hit.
[Graphical view]
SUPFAMiSSF103515. SSF103515. 1 hit.
SSF51126. SSF51126. 1 hit.
TIGRFAMsiTIGR01414. autotrans_barl. 1 hit.
PROSITEiPS51208. AUTOTRANSPORTER. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76017-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGIKQHNGNT KADRLAELKI RSPSIQLIKF GAIGLNAIIF SPLLIAADTG
60 70 80 90 100
SQYGTNITIN DGDRITGDTA DPSGNLYGVM TPAGNTPGNI NLGNDVTVNV
110 120 130 140 150
NDASGYAKGI IIQGKNSSLT ANRLTVDVVG QTSAIGINLI GDYTHADLGT
160 170 180 190 200
GSTIKSNDDG IIIGHSSTLT ATQFTIENSN GIGLTINDYG TSVDLGSGSK
210 220 230 240 250
ITTDGSTGVY IGGLNGNNAN GAARFTATDL TIDVQGYSAM GINVQKNSVV
260 270 280 290 300
DLGTNSTIKT NGDNAHGLWS FGQVSANALT VDVTGAAANG VEVRGGTTTI
310 320 330 340 350
GADSHISSAQ GGGLVTSGSD AIINFTGTAA QRNSIFSGGS YGASAQTATA
360 370 380 390 400
VVNMQNTDIT VDRNGSLALG LWALSGGRIT GDSLAITGAA GARGIYAMTN
410 420 430 440 450
SQIDLTSDLV IDMSTPDQMA IATQHDDGYA ASRINASGRM LINGSVLSKG
460 470 480 490 500
GLINLDMHPG SVWTGSSLSD NVNGGKLDVA MNNSVWNVTS NSNLDTLALS
510 520 530 540 550
HSTVDFASHG STAGTFATLN VENLSGNSTF IMRADVVGEG NGVNNKGDLL
560 570 580 590 600
NISGSSAGNH VLAIRNQGSE ATTGNEVLTV VKTTDGAASF SASSQVELGG
610 620 630 640 650
YLYDVRKNGT NWELYASGTV PEPTPNPEPT PAPAQPPIVN PDPTPEPAPT
660 670 680 690 700
PKPTTTADAG GNYLNVGYLL NYVENRTLMQ RMGDLRNQSK DGNIWLRSYG
710 720 730 740 750
GSLDSFASGK LSGFDMGYSG IQFGGDKRLS DVMPLYVGLY IGSTHASPDY
760 770 780 790 800
SGGDGTARSD YMGMYASYMA QNGFYSDLVI KASRQKNSFH VLDSQNNGVN
810 820 830 840 850
ANGTANGMSI SLEAGQRFNL SPTGYGFYIE PQTQLTYSHQ NEMTMKASNG
860 870 880 890 900
LNIHLNHYES LLGRASMILG YDITAGNSQL NVYVKTGAIR EFSGDTEYLL
910 920 930 940 950
NNSREKYSFK GNGWNNGVGV SAQYNKQHTF YLEADYTQGN LFDQKQVNGG

YRFSF
Length:955
Mass (Da):99,685
Last modified:February 1, 1997 - v1
Checksum:i5EDD67B15EA1D9AF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74286.1.
AP009048 Genomic DNA. Translation: BAA36059.2.
PIRiG64866.
RefSeqiNP_415720.1. NC_000913.3.
WP_001334788.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74286; AAC74286; b1202.
BAA36059; BAA36059; BAA36059.
GeneIDi945767.
KEGGiecj:JW1193.
eco:b1202.
PATRICi32117654. VBIEscCol129921_1249.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74286.1.
AP009048 Genomic DNA. Translation: BAA36059.2.
PIRiG64866.
RefSeqiNP_415720.1. NC_000913.3.
WP_001334788.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76017.
SMRiP76017. Positions 669-955.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260897. 218 interactions.
IntActiP76017. 2 interactions.
STRINGi511145.b1202.

Protein family/group databases

TCDBi1.B.12.2.6. the autotransporter-1 (at-1) family.

Proteomic databases

PaxDbiP76017.
PRIDEiP76017.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74286; AAC74286; b1202.
BAA36059; BAA36059; BAA36059.
GeneIDi945767.
KEGGiecj:JW1193.
eco:b1202.
PATRICi32117654. VBIEscCol129921_1249.

Organism-specific databases

EchoBASEiEB3662.
EcoGeneiEG13903. ycgV.

Phylogenomic databases

eggNOGiENOG4105I1J. Bacteria.
COG3468. LUCA.
HOGENOMiHOG000009435.
OMAiNFLNIGY.
PhylomeDBiP76017.

Enzyme and pathway databases

BioCyciEcoCyc:G6629-MONOMER.
ECOL316407:JW1193-MONOMER.

Miscellaneous databases

PROiP76017.

Family and domain databases

Gene3Di2.160.20.20. 1 hit.
2.40.128.130. 1 hit.
InterProiIPR005546. Autotransporte_beta.
IPR006315. OM_autotransptr_brl.
IPR012332. P22_tailspike_C-like.
IPR011050. Pectin_lyase_fold/virulence.
IPR004899. Pertactin_central.
IPR003991. Pertactin_virulence_factor.
[Graphical view]
PfamiPF03797. Autotransporter. 1 hit.
PF03212. Pertactin. 1 hit.
[Graphical view]
PRINTSiPR01484. PRTACTNFAMLY.
SMARTiSM00869. Autotransporter. 1 hit.
[Graphical view]
SUPFAMiSSF103515. SSF103515. 1 hit.
SSF51126. SSF51126. 1 hit.
TIGRFAMsiTIGR01414. autotrans_barl. 1 hit.
PROSITEiPS51208. AUTOTRANSPORTER. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYCGV_ECOLI
AccessioniPrimary (citable) accession number: P76017
Secondary accession number(s): Q9R7N1, Q9R7N2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 16, 2002
Last sequence update: February 1, 1997
Last modified: September 7, 2016
This is version 114 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.