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Protein

UPF0410 protein ymge

Gene

ymgE

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6624-MONOMER.
ECOL316407:JW1184-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0410 protein ymge
Alternative name(s):
Transglycosylase-associated gene protein
Gene namesi
Name:ymgE
Synonyms:tag
Ordered Locus Names:b1195, JW1184
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14338. ymgE.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei1 – 2121HelicalSequence analysisAdd
BLAST
Transmembranei27 – 4721HelicalSequence analysisAdd
BLAST
Transmembranei58 – 7821HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 8484UPF0410 protein ymgePRO_0000072420Add
BLAST

Proteomic databases

PaxDbiP76011.

Interactioni

Protein-protein interaction databases

BioGridi4262916. 114 interactions.
STRINGi511145.b1195.

Structurei

3D structure databases

ProteinModelPortaliP76011.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0410 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105Y3U. Bacteria.
COG2261. LUCA.
HOGENOMiHOG000281220.
InParanoidiP76011.
OMAiFFQTCIL.
PhylomeDBiP76011.

Family and domain databases

InterProiIPR007341. Transgly_assoc.
[Graphical view]
PfamiPF04226. Transgly_assoc. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76011-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGIIAWIIFD LIAGIIAKLI MPGRDGGGFF LTCILGIVGA VVGGWLATMF
60 70 80
GIGGSISGFN LHSFLVAVVG AILVLGIFRL LRRE
Length:84
Mass (Da):8,775
Last modified:July 11, 2001 - v3
Checksum:i78ED929220264E62
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74279.1.
AP009048 Genomic DNA. Translation: BAA36053.1.
PIRiH64865.
RefSeqiNP_415713.1. NC_000913.3.
WP_001310727.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74279; AAC74279; b1195.
BAA36053; BAA36053; BAA36053.
GeneIDi945760.
KEGGiecj:JW1184.
eco:b1195.
PATRICi32117638. VBIEscCol129921_1241.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74279.1.
AP009048 Genomic DNA. Translation: BAA36053.1.
PIRiH64865.
RefSeqiNP_415713.1. NC_000913.3.
WP_001310727.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76011.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262916. 114 interactions.
STRINGi511145.b1195.

Proteomic databases

PaxDbiP76011.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74279; AAC74279; b1195.
BAA36053; BAA36053; BAA36053.
GeneIDi945760.
KEGGiecj:JW1184.
eco:b1195.
PATRICi32117638. VBIEscCol129921_1241.

Organism-specific databases

EchoBASEiEB4084.
EcoGeneiEG14338. ymgE.

Phylogenomic databases

eggNOGiENOG4105Y3U. Bacteria.
COG2261. LUCA.
HOGENOMiHOG000281220.
InParanoidiP76011.
OMAiFFQTCIL.
PhylomeDBiP76011.

Enzyme and pathway databases

BioCyciEcoCyc:G6624-MONOMER.
ECOL316407:JW1184-MONOMER.

Miscellaneous databases

PROiP76011.

Family and domain databases

InterProiIPR007341. Transgly_assoc.
[Graphical view]
PfamiPF04226. Transgly_assoc. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYMGE_ECOLI
AccessioniPrimary (citable) accession number: P76011
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: July 11, 2001
Last modified: September 7, 2016
This is version 109 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.