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Protein

Uncharacterized protein YcgM

Gene

ycgM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi70Divalent metal cationBy similarity1
Metal bindingi72Divalent metal cationBy similarity1
Metal bindingi101Divalent metal cationBy similarity1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Metal-binding

Enzyme and pathway databases

BioCyciEcoCyc:G6617-MONOMER.
ECOL316407:JW1169-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YcgM
Gene namesi
Name:ycgM
Ordered Locus Names:b1180, JW1169
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13894. ycgM.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001568361 – 219Uncharacterized protein YcgMAdd BLAST219

Proteomic databases

EPDiP76004.
PaxDbiP76004.
PRIDEiP76004.

Interactioni

Protein-protein interaction databases

BioGridi4262872. 11 interactors.
DIPiDIP-11558N.
IntActiP76004. 3 interactors.
STRINGi511145.b1180.

Structurei

Secondary structure

1219
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi19 – 23Combined sources5
Beta strandi43 – 46Combined sources4
Helixi48 – 50Combined sources3
Beta strandi51 – 53Combined sources3
Beta strandi62 – 65Combined sources4
Beta strandi67 – 69Combined sources3
Beta strandi71 – 77Combined sources7
Beta strandi81 – 83Combined sources3
Helixi86 – 92Combined sources7
Beta strandi93 – 100Combined sources8
Helixi105 – 114Combined sources10
Helixi119 – 122Combined sources4
Beta strandi128 – 130Combined sources3
Beta strandi133 – 135Combined sources3
Helixi136 – 138Combined sources3
Helixi143 – 145Combined sources3
Beta strandi147 – 152Combined sources6
Beta strandi155 – 161Combined sources7
Helixi162 – 164Combined sources3
Beta strandi165 – 167Combined sources3
Helixi169 – 176Combined sources8
Turni177 – 179Combined sources3
Beta strandi187 – 189Combined sources3
Beta strandi197 – 199Combined sources3
Beta strandi204 – 209Combined sources6
Beta strandi212 – 218Combined sources7

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NR9X-ray2.70A/B/C/D1-219[»]
ProteinModelPortaliP76004.
SMRiP76004.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP76004.

Family & Domainsi

Sequence similaritiesi

Belongs to the FAH family.Curated

Phylogenomic databases

eggNOGiENOG4105FBJ. Bacteria.
COG0179. LUCA.
HOGENOMiHOG000063753.
InParanoidiP76004.
OMAiLHAPIPK.
PhylomeDBiP76004.

Family and domain databases

Gene3Di3.90.850.10. 1 hit.
InterProiIPR011234. Fumarylacetoacetase_C-rel.
[Graphical view]
PfamiPF01557. FAA_hydrolase. 1 hit.
[Graphical view]
SUPFAMiSSF56529. SSF56529. 1 hit.

Sequencei

Sequence statusi: Complete.

P76004-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYQHHNWQGA LLDYPVSKVV CVGSNYAKHI KEMGSAVPEE PVLFIKPETA
60 70 80 90 100
LCDLRQPLAI PSDFGSVHHE VELAVLIGAT LRQATEEHVR KAIAGYGVAL
110 120 130 140 150
DLTLRDVQGK MKKAGQPWEK AKAFDNSCPL SGFIPAAEFT GDPQNTTLSL
160 170 180 190 200
SVNGEQRQQG TTADMIHKIV PLIAYMSKFF TLKAGDVVLT GTPDGVGPLQ
210
SGDELTVTFD GHSLTTRVL
Length:219
Mass (Da):23,711
Last modified:February 1, 1997 - v1
Checksum:i2A31BF853E0A4881
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74264.1.
AP009048 Genomic DNA. Translation: BAA36014.1.
PIRiA64864.
RefSeqiNP_415698.1. NC_000913.3.
WP_000284280.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74264; AAC74264; b1180.
BAA36014; BAA36014; BAA36014.
GeneIDi946115.
KEGGiecj:JW1169.
eco:b1180.
PATRICi32117606. VBIEscCol129921_1225.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74264.1.
AP009048 Genomic DNA. Translation: BAA36014.1.
PIRiA64864.
RefSeqiNP_415698.1. NC_000913.3.
WP_000284280.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1NR9X-ray2.70A/B/C/D1-219[»]
ProteinModelPortaliP76004.
SMRiP76004.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262872. 11 interactors.
DIPiDIP-11558N.
IntActiP76004. 3 interactors.
STRINGi511145.b1180.

Proteomic databases

EPDiP76004.
PaxDbiP76004.
PRIDEiP76004.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74264; AAC74264; b1180.
BAA36014; BAA36014; BAA36014.
GeneIDi946115.
KEGGiecj:JW1169.
eco:b1180.
PATRICi32117606. VBIEscCol129921_1225.

Organism-specific databases

EchoBASEiEB3653.
EcoGeneiEG13894. ycgM.

Phylogenomic databases

eggNOGiENOG4105FBJ. Bacteria.
COG0179. LUCA.
HOGENOMiHOG000063753.
InParanoidiP76004.
OMAiLHAPIPK.
PhylomeDBiP76004.

Enzyme and pathway databases

BioCyciEcoCyc:G6617-MONOMER.
ECOL316407:JW1169-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP76004.
PROiP76004.

Family and domain databases

Gene3Di3.90.850.10. 1 hit.
InterProiIPR011234. Fumarylacetoacetase_C-rel.
[Graphical view]
PfamiPF01557. FAA_hydrolase. 1 hit.
[Graphical view]
SUPFAMiSSF56529. SSF56529. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYCGM_ECOLI
AccessioniPrimary (citable) accession number: P76004
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 109 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.