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Protein

Uncharacterized protein YcgM

Gene

ycgM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi70 – 701Divalent metal cationBy similarity
Metal bindingi72 – 721Divalent metal cationBy similarity
Metal bindingi101 – 1011Divalent metal cationBy similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Metal-binding

Enzyme and pathway databases

BioCyciEcoCyc:G6617-MONOMER.
ECOL316407:JW1169-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YcgM
Gene namesi
Name:ycgM
Ordered Locus Names:b1180, JW1169
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13894. ycgM.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 219219Uncharacterized protein YcgMPRO_0000156836Add
BLAST

Proteomic databases

EPDiP76004.
PaxDbiP76004.

Interactioni

Protein-protein interaction databases

BioGridi4262872. 11 interactions.
DIPiDIP-11558N.
IntActiP76004. 3 interactions.
STRINGi511145.b1180.

Structurei

Secondary structure

1
219
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi19 – 235Combined sources
Beta strandi43 – 464Combined sources
Helixi48 – 503Combined sources
Beta strandi51 – 533Combined sources
Beta strandi62 – 654Combined sources
Beta strandi67 – 693Combined sources
Beta strandi71 – 777Combined sources
Beta strandi81 – 833Combined sources
Helixi86 – 927Combined sources
Beta strandi93 – 1008Combined sources
Helixi105 – 11410Combined sources
Helixi119 – 1224Combined sources
Beta strandi128 – 1303Combined sources
Beta strandi133 – 1353Combined sources
Helixi136 – 1383Combined sources
Helixi143 – 1453Combined sources
Beta strandi147 – 1526Combined sources
Beta strandi155 – 1617Combined sources
Helixi162 – 1643Combined sources
Beta strandi165 – 1673Combined sources
Helixi169 – 1768Combined sources
Turni177 – 1793Combined sources
Beta strandi187 – 1893Combined sources
Beta strandi197 – 1993Combined sources
Beta strandi204 – 2096Combined sources
Beta strandi212 – 2187Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1NR9X-ray2.70A/B/C/D1-219[»]
ProteinModelPortaliP76004.
SMRiP76004. Positions 1-219.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP76004.

Family & Domainsi

Sequence similaritiesi

Belongs to the FAH family.Curated

Phylogenomic databases

eggNOGiENOG4105FBJ. Bacteria.
COG0179. LUCA.
HOGENOMiHOG000063753.
InParanoidiP76004.
OMAiLHAPIPK.
PhylomeDBiP76004.

Family and domain databases

Gene3Di3.90.850.10. 1 hit.
InterProiIPR011234. Fumarylacetoacetase_C-rel.
[Graphical view]
PfamiPF01557. FAA_hydrolase. 1 hit.
[Graphical view]
SUPFAMiSSF56529. SSF56529. 1 hit.

Sequencei

Sequence statusi: Complete.

P76004-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYQHHNWQGA LLDYPVSKVV CVGSNYAKHI KEMGSAVPEE PVLFIKPETA
60 70 80 90 100
LCDLRQPLAI PSDFGSVHHE VELAVLIGAT LRQATEEHVR KAIAGYGVAL
110 120 130 140 150
DLTLRDVQGK MKKAGQPWEK AKAFDNSCPL SGFIPAAEFT GDPQNTTLSL
160 170 180 190 200
SVNGEQRQQG TTADMIHKIV PLIAYMSKFF TLKAGDVVLT GTPDGVGPLQ
210
SGDELTVTFD GHSLTTRVL
Length:219
Mass (Da):23,711
Last modified:February 1, 1997 - v1
Checksum:i2A31BF853E0A4881
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74264.1.
AP009048 Genomic DNA. Translation: BAA36014.1.
PIRiA64864.
RefSeqiNP_415698.1. NC_000913.3.
WP_000284280.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74264; AAC74264; b1180.
BAA36014; BAA36014; BAA36014.
GeneIDi946115.
KEGGiecj:JW1169.
eco:b1180.
PATRICi32117606. VBIEscCol129921_1225.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74264.1.
AP009048 Genomic DNA. Translation: BAA36014.1.
PIRiA64864.
RefSeqiNP_415698.1. NC_000913.3.
WP_000284280.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1NR9X-ray2.70A/B/C/D1-219[»]
ProteinModelPortaliP76004.
SMRiP76004. Positions 1-219.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262872. 11 interactions.
DIPiDIP-11558N.
IntActiP76004. 3 interactions.
STRINGi511145.b1180.

Proteomic databases

EPDiP76004.
PaxDbiP76004.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74264; AAC74264; b1180.
BAA36014; BAA36014; BAA36014.
GeneIDi946115.
KEGGiecj:JW1169.
eco:b1180.
PATRICi32117606. VBIEscCol129921_1225.

Organism-specific databases

EchoBASEiEB3653.
EcoGeneiEG13894. ycgM.

Phylogenomic databases

eggNOGiENOG4105FBJ. Bacteria.
COG0179. LUCA.
HOGENOMiHOG000063753.
InParanoidiP76004.
OMAiLHAPIPK.
PhylomeDBiP76004.

Enzyme and pathway databases

BioCyciEcoCyc:G6617-MONOMER.
ECOL316407:JW1169-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP76004.
PROiP76004.

Family and domain databases

Gene3Di3.90.850.10. 1 hit.
InterProiIPR011234. Fumarylacetoacetase_C-rel.
[Graphical view]
PfamiPF01557. FAA_hydrolase. 1 hit.
[Graphical view]
SUPFAMiSSF56529. SSF56529. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYCGM_ECOLI
AccessioniPrimary (citable) accession number: P76004
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: February 1, 1997
Last modified: September 7, 2016
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.