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Protein

Uncharacterized protein YmfN

Gene

ymfN

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein uncertaini

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6593-MONOMER.
ECOL316407:JW1135-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YmfN
Gene namesi
Name:ymfN
Ordered Locus Names:b1149, JW1135
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14252. ymfN.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 455455Uncharacterized protein YmfNPRO_0000168847Add
BLAST

Interactioni

Protein-protein interaction databases

BioGridi4261568. 6 interactions.
DIPiDIP-12724N.
IntActiP75978. 1 interaction.
MINTiMINT-1257432.
STRINGi316407.4062724.

Structurei

3D structure databases

ProteinModelPortaliP75978.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the phage terminase family.Curated

Phylogenomic databases

eggNOGiENOG4105CAR. Bacteria.
COG4626. LUCA.
HOGENOMiHOG000202510.
InParanoidiP75978.
OMAiIDEYHEH.
PhylomeDBiP75978.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005021. Phage_terminase.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF03354. Terminase_1. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.

Sequencei

Sequence statusi: Complete.

P75978-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTKLTGYVW DGCAASGMKL SSVAIMARLA DFSNDEGVCW PSIETIARQI
60 70 80 90 100
GAGMSTVRTA IARLEAEGWL TRKARRQGDG SSPHCAVVDE YHEHATDALY
110 120 130 140 150
TTMLTGMGAR RQPLMWAITT AGYNIEGPCY DKRREVIEML NGSVPNDELF
160 170 180 190 200
GIIYTVDEGD DWTDPQVLEK ANPNIGVSVY REFLLSQQQR AKNNARLANV
210 220 230 240 250
FKTKHLNIWA SARSAYFNLV SWQSCEDKSL TLEQFEGQPC ILAFDLARKL
260 270 280 290 300
DMNSMARLYT REIDGKTHYY SVAPRFWVPY DTVYSVEKNE DRRTAERFQK
310 320 330 340 350
WVEMGVLTVT DGAEVDYRYI LEEAKAANKI SPVSESPIDP FGATGLSHDL
360 370 380 390 400
ADEDLNPVTI IQNYTNMSDP MKELEAAIES GRFHHDGNPI MTWCIGNVVG
410 420 430 440 450
KTIPGNDDVV KPVKEQAENK IDGAVALIMA VGRAMLYEKE DTLSDHIESY

GIRSL
Length:455
Mass (Da):50,871
Last modified:February 1, 1997 - v1
Checksum:i4FA7FF2BEB90D6CC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAA35975.1.
PIRiB64860.
RefSeqiWP_000104929.1. NZ_CP010440.1.

Genome annotation databases

EnsemblBacteriaiBAA35975; BAA35975; BAA35975.
KEGGiecj:JW1135.
PATRICi48661559. VBIEscCol107702_1148.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAA35975.1.
PIRiB64860.
RefSeqiWP_000104929.1. NZ_CP010440.1.

3D structure databases

ProteinModelPortaliP75978.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261568. 6 interactions.
DIPiDIP-12724N.
IntActiP75978. 1 interaction.
MINTiMINT-1257432.
STRINGi316407.4062724.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA35975; BAA35975; BAA35975.
KEGGiecj:JW1135.
PATRICi48661559. VBIEscCol107702_1148.

Organism-specific databases

EchoBASEiEB4000.
EcoGeneiEG14252. ymfN.

Phylogenomic databases

eggNOGiENOG4105CAR. Bacteria.
COG4626. LUCA.
HOGENOMiHOG000202510.
InParanoidiP75978.
OMAiIDEYHEH.
PhylomeDBiP75978.

Enzyme and pathway databases

BioCyciEcoCyc:G6593-MONOMER.
ECOL316407:JW1135-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005021. Phage_terminase.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF03354. Terminase_1. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYMFN_ECOLI
AccessioniPrimary (citable) accession number: P75978
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: January 20, 2016
This is version 114 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.