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Protein

Uncharacterized protein YmfD

Gene

ymfD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6582-MONOMER.
ECOL316407:JW1123-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YmfD
Gene namesi
Name:ymfD
Ordered Locus Names:b1137, JW1123
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13448. ymfD.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 221221Uncharacterized protein YmfDPRO_0000168841Add
BLAST

Proteomic databases

PaxDbiP75967.

Interactioni

Protein-protein interaction databases

BioGridi4260081. 6 interactions.
DIPiDIP-12717N.
IntActiP75967. 3 interactions.
STRINGi511145.b1137.

Structurei

3D structure databases

ProteinModelPortaliP75967.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4106JA9. Bacteria.
ENOG410YCU8. LUCA.
HOGENOMiHOG000294615.
InParanoidiP75967.
OMAiDFILCAN.
OrthoDBiEOG63C0RP.

Family and domain databases

Gene3Di3.40.50.150. 1 hit.
InterProiIPR029063. SAM-dependent_MTases.
[Graphical view]
SUPFAMiSSF53335. SSF53335. 1 hit.

Sequencei

Sequence statusi: Complete.

P75967-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVLALNYNMH GVNIRSENAA KPHTMPSRYL CEYIRSIEKN GHALDFGCGK
60 70 80 90 100
LRYSDELISK FDEVTFLDSK RQLEREQIIR GIKTKIIDYV PRYYKNANTV
110 120 130 140 150
AFEDVDKIIG GYDFILCSNV LSAVPCRDTI DKIVLSIKRL LKSGGETLIV
160 170 180 190 200
NQYKSSYFKK YETGRKHLYG YIYKNSKSVS YYGLLDELAV QEICSSHGLE
210 220
ILKSWSKAGS SYVTVGSCNA I
Length:221
Mass (Da):25,147
Last modified:February 1, 1997 - v1
Checksum:iBFA8845F9AC109E9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74221.1.
AP009048 Genomic DNA. Translation: BAE76375.1.
PIRiF64858.
RefSeqiNP_415655.1. NC_000913.3.
WP_000241967.1. NZ_CP010440.1.

Genome annotation databases

EnsemblBacteriaiAAC74221; AAC74221; b1137.
BAE76375; BAE76375; BAE76375.
GeneIDi945329.
KEGGiecj:JW1123.
eco:b1137.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74221.1.
AP009048 Genomic DNA. Translation: BAE76375.1.
PIRiF64858.
RefSeqiNP_415655.1. NC_000913.3.
WP_000241967.1. NZ_CP010440.1.

3D structure databases

ProteinModelPortaliP75967.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260081. 6 interactions.
DIPiDIP-12717N.
IntActiP75967. 3 interactions.
STRINGi511145.b1137.

Proteomic databases

PaxDbiP75967.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74221; AAC74221; b1137.
BAE76375; BAE76375; BAE76375.
GeneIDi945329.
KEGGiecj:JW1123.
eco:b1137.

Organism-specific databases

EchoBASEiEB3222.
EcoGeneiEG13448. ymfD.

Phylogenomic databases

eggNOGiENOG4106JA9. Bacteria.
ENOG410YCU8. LUCA.
HOGENOMiHOG000294615.
InParanoidiP75967.
OMAiDFILCAN.
OrthoDBiEOG63C0RP.

Enzyme and pathway databases

BioCyciEcoCyc:G6582-MONOMER.
ECOL316407:JW1123-MONOMER.

Miscellaneous databases

PROiP75967.

Family and domain databases

Gene3Di3.40.50.150. 1 hit.
InterProiIPR029063. SAM-dependent_MTases.
[Graphical view]
SUPFAMiSSF53335. SSF53335. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYMFD_ECOLI
AccessioniPrimary (citable) accession number: P75967
Secondary accession number(s): Q2MBI1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: May 11, 2016
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.