Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Inner membrane protein YcfT

Gene

ycfT

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G6572-MONOMER.
ECOL316407:JW1101-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YcfT
Gene namesi
Name:ycfT
Ordered Locus Names:b1115, JW1101
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13438. ycfT.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 1212CytoplasmicSequence analysisAdd
BLAST
Transmembranei13 – 3321HelicalSequence analysisAdd
BLAST
Topological domaini34 – 4916PeriplasmicSequence analysisAdd
BLAST
Transmembranei50 – 7021HelicalSequence analysisAdd
BLAST
Topological domaini71 – 8616CytoplasmicSequence analysisAdd
BLAST
Transmembranei87 – 10721HelicalSequence analysisAdd
BLAST
Topological domaini108 – 13528PeriplasmicSequence analysisAdd
BLAST
Transmembranei136 – 15621HelicalSequence analysisAdd
BLAST
Topological domaini157 – 1626CytoplasmicSequence analysis
Transmembranei163 – 18321HelicalSequence analysisAdd
BLAST
Topological domaini184 – 19613PeriplasmicSequence analysisAdd
BLAST
Transmembranei197 – 21721HelicalSequence analysisAdd
BLAST
Topological domaini218 – 23114CytoplasmicSequence analysisAdd
BLAST
Transmembranei232 – 25221HelicalSequence analysisAdd
BLAST
Topological domaini253 – 31058PeriplasmicSequence analysisAdd
BLAST
Transmembranei311 – 33121HelicalSequence analysisAdd
BLAST
Topological domaini332 – 35726CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 357357Inner membrane protein YcfTPRO_0000208097Add
BLAST

Proteomic databases

PaxDbiP75955.

Interactioni

Protein-protein interaction databases

BioGridi4260087. 117 interactions.
STRINGi511145.b1115.

Structurei

3D structure databases

ProteinModelPortaliP75955.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the acyltransferase 3 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105IQC. Bacteria.
COG4763. LUCA.
HOGENOMiHOG000119085.
InParanoidiP75955.
OMAiLDKRIWS.
OrthoDBiEOG6FBWVF.

Family and domain databases

InterProiIPR002656. Acyl_transf_3.
[Graphical view]
PfamiPF01757. Acyl_transf_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P75955-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKQKELWINQ IKGLCICLVV IYHSVITFYP HLTTFQHPLS EVLSKCWIYF
60 70 80 90 100
NLYLAPFRMP VFFFISGYLI RRYIDSVPWG NCLDKRIWNI FWVLALWGVV
110 120 130 140 150
QWLALSALNQ WLAPERDLSN ASNAAYADST GEFLHGMITA STSLWYLYAL
160 170 180 190 200
IVYFVVCKIF SRLALPLFAL FVLLSVAVNF VPTPWWGMNS VIRNLPYYSL
210 220 230 240 250
GAWFGATIMT CVKEVPLRRH LLMASLLTVL AVGAWLFTIS LLLSLVSIVV
260 270 280 290 300
IMKLFYQYEQ RFGMRSTSLL NVIGSNTIAI YTTHRILVEI FSLTLLAQMN
310 320 330 340 350
AARWSPQVEL TLLLVYPFVS LFICTVAGLL VRKLSQRAFS DLLFSPPSLP

AAVSYSR
Length:357
Mass (Da):40,834
Last modified:February 1, 1997 - v1
Checksum:iF1ED5FBC7781A4F9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74199.1.
AP009048 Genomic DNA. Translation: BAA35930.1.
PIRiH64855.
RefSeqiNP_415633.1. NC_000913.3.
WP_000810253.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74199; AAC74199; b1115.
BAA35930; BAA35930; BAA35930.
GeneIDi945679.
KEGGiecj:JW1101.
eco:b1115.
PATRICi32117473. VBIEscCol129921_1159.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74199.1.
AP009048 Genomic DNA. Translation: BAA35930.1.
PIRiH64855.
RefSeqiNP_415633.1. NC_000913.3.
WP_000810253.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP75955.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260087. 117 interactions.
STRINGi511145.b1115.

Proteomic databases

PaxDbiP75955.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74199; AAC74199; b1115.
BAA35930; BAA35930; BAA35930.
GeneIDi945679.
KEGGiecj:JW1101.
eco:b1115.
PATRICi32117473. VBIEscCol129921_1159.

Organism-specific databases

EchoBASEiEB3212.
EcoGeneiEG13438. ycfT.

Phylogenomic databases

eggNOGiENOG4105IQC. Bacteria.
COG4763. LUCA.
HOGENOMiHOG000119085.
InParanoidiP75955.
OMAiLDKRIWS.
OrthoDBiEOG6FBWVF.

Enzyme and pathway databases

BioCyciEcoCyc:G6572-MONOMER.
ECOL316407:JW1101-MONOMER.

Miscellaneous databases

PROiP75955.

Family and domain databases

InterProiIPR002656. Acyl_transf_3.
[Graphical view]
PfamiPF01757. Acyl_transf_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYCFT_ECOLI
AccessioniPrimary (citable) accession number: P75955
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: April 13, 2016
This is version 103 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.