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Protein

Putative oxidoreductase YceM

Gene

yceM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Enzyme and pathway databases

BioCyciEcoCyc:G6560-MONOMER.
ECOL316407:JW1055-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative oxidoreductase YceM (EC:1.-.-.-)
Gene namesi
Name:yceM
Synonyms:mviM
Ordered Locus Names:b1068, JW1055
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13879. yceM.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 307307Putative oxidoreductase YceMPRO_0000096654Add
BLAST

Proteomic databases

EPDiP75931.
PaxDbiP75931.

Interactioni

Protein-protein interaction databases

BioGridi4259403. 14 interactions.
IntActiP75931. 3 interactions.
STRINGi511145.b1068.

Structurei

Secondary structure

1
307
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi4 – 96Combined sources
Helixi14 – 174Combined sources
Helixi19 – 246Combined sources
Beta strandi27 – 359Combined sources
Helixi42 – 498Combined sources
Helixi57 – 615Combined sources
Beta strandi65 – 695Combined sources
Helixi73 – 753Combined sources
Helixi76 – 8510Combined sources
Beta strandi89 – 968Combined sources
Helixi100 – 11213Combined sources
Beta strandi117 – 1204Combined sources
Helixi122 – 1254Combined sources
Helixi127 – 1326Combined sources
Turni133 – 1353Combined sources
Helixi136 – 1383Combined sources
Beta strandi141 – 1466Combined sources
Helixi157 – 1637Combined sources
Helixi165 – 17511Combined sources
Turni176 – 1783Combined sources
Beta strandi182 – 1898Combined sources
Beta strandi195 – 20410Combined sources
Beta strandi207 – 21812Combined sources
Beta strandi222 – 2287Combined sources
Beta strandi231 – 2366Combined sources
Turni237 – 2393Combined sources
Beta strandi240 – 2478Combined sources
Beta strandi249 – 2513Combined sources
Helixi260 – 2634Combined sources
Helixi266 – 27914Combined sources
Helixi287 – 2904Combined sources
Helixi292 – 30413Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1TLTX-ray2.70A/B2-307[»]
ProteinModelPortaliP75931.
SMRiP75931. Positions 3-307.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP75931.

Family & Domainsi

Sequence similaritiesi

Belongs to the Gfo/Idh/MocA family.Curated

Phylogenomic databases

eggNOGiENOG4105EP9. Bacteria.
COG0673. LUCA.
HOGENOMiHOG000039102.
InParanoidiP75931.
KOiK03810.
OMAiVCQQYRI.
OrthoDBiEOG6ZD664.
PhylomeDBiP75931.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
IPR000683. Oxidoreductase_N.
[Graphical view]
PfamiPF01408. GFO_IDH_MocA. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.

Sequencei

Sequence statusi: Complete.

P75931-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKLRIGVVG LGGIAQKAWL PVLAAASDWT LQGAWSPTRA KALPICESWR
60 70 80 90 100
IPYADSLSSL AASCDAVFVH SSTASHFDVV STLLNAGVHV CVDKPLAENL
110 120 130 140 150
RDAERLVELA ARKKLTLMVG FNRRFAPLYG ELKTQLATAA SLRMDKHRSN
160 170 180 190 200
SVGPHDLYFT LLDDYLHVVD TALWLSGGKA SLDGGTLLTN DAGEMLFAEH
210 220 230 240 250
HFSAGPLQIT TCMHRRAGSQ RETVQAVTDG ALIDITDMRE WREERGQGVV
260 270 280 290 300
HKPIPGWQST LEQRGFVGCA RHFIECVQNQ TVPQTAGEQA VLAQRIVDKI

WRDAMSE
Length:307
Mass (Da):33,682
Last modified:February 1, 1997 - v1
Checksum:iE8BB622AE0C5C92C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74152.1.
AP009048 Genomic DNA. Translation: BAA35876.1.
PIRiA64850.
RefSeqiNP_415586.1. NC_000913.3.
WP_000736158.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74152; AAC74152; b1068.
BAA35876; BAA35876; BAA35876.
GeneIDi945204.
KEGGiecj:JW1055.
eco:b1068.
PATRICi32117375. VBIEscCol129921_1110.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74152.1.
AP009048 Genomic DNA. Translation: BAA35876.1.
PIRiA64850.
RefSeqiNP_415586.1. NC_000913.3.
WP_000736158.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1TLTX-ray2.70A/B2-307[»]
ProteinModelPortaliP75931.
SMRiP75931. Positions 3-307.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259403. 14 interactions.
IntActiP75931. 3 interactions.
STRINGi511145.b1068.

Proteomic databases

EPDiP75931.
PaxDbiP75931.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74152; AAC74152; b1068.
BAA35876; BAA35876; BAA35876.
GeneIDi945204.
KEGGiecj:JW1055.
eco:b1068.
PATRICi32117375. VBIEscCol129921_1110.

Organism-specific databases

EchoBASEiEB3638.
EcoGeneiEG13879. yceM.

Phylogenomic databases

eggNOGiENOG4105EP9. Bacteria.
COG0673. LUCA.
HOGENOMiHOG000039102.
InParanoidiP75931.
KOiK03810.
OMAiVCQQYRI.
OrthoDBiEOG6ZD664.
PhylomeDBiP75931.

Enzyme and pathway databases

BioCyciEcoCyc:G6560-MONOMER.
ECOL316407:JW1055-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP75931.
PROiP75931.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
IPR000683. Oxidoreductase_N.
[Graphical view]
PfamiPF01408. GFO_IDH_MocA. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Crystal structure of a putative oxidoreductase (virulence factor MviM homolog)."
    Rajashankar K.R., Solorzano V., Kniewel R., Lima C.D.
    Submitted (JUN-2004) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.70 ANGSTROMS) OF 2-307.

Entry informationi

Entry nameiYCEM_ECOLI
AccessioniPrimary (citable) accession number: P75931
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: March 16, 2016
This is version 112 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.