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Protein

Putative oxidoreductase YceM

Gene

yceM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Enzyme and pathway databases

BioCyciEcoCyc:G6560-MONOMER.
ECOL316407:JW1055-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative oxidoreductase YceM (EC:1.-.-.-)
Gene namesi
Name:yceM
Synonyms:mviM
Ordered Locus Names:b1068, JW1055
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13879. yceM.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000966541 – 307Putative oxidoreductase YceMAdd BLAST307

Proteomic databases

EPDiP75931.
PaxDbiP75931.
PRIDEiP75931.

Interactioni

Protein-protein interaction databases

BioGridi4259403. 14 interactors.
IntActiP75931. 3 interactors.
STRINGi511145.b1068.

Structurei

Secondary structure

1307
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 9Combined sources6
Helixi14 – 17Combined sources4
Helixi19 – 24Combined sources6
Beta strandi27 – 35Combined sources9
Helixi42 – 49Combined sources8
Helixi57 – 61Combined sources5
Beta strandi65 – 69Combined sources5
Helixi73 – 75Combined sources3
Helixi76 – 85Combined sources10
Beta strandi89 – 96Combined sources8
Helixi100 – 112Combined sources13
Beta strandi117 – 120Combined sources4
Helixi122 – 125Combined sources4
Helixi127 – 132Combined sources6
Turni133 – 135Combined sources3
Helixi136 – 138Combined sources3
Beta strandi141 – 146Combined sources6
Helixi157 – 163Combined sources7
Helixi165 – 175Combined sources11
Turni176 – 178Combined sources3
Beta strandi182 – 189Combined sources8
Beta strandi195 – 204Combined sources10
Beta strandi207 – 218Combined sources12
Beta strandi222 – 228Combined sources7
Beta strandi231 – 236Combined sources6
Turni237 – 239Combined sources3
Beta strandi240 – 247Combined sources8
Beta strandi249 – 251Combined sources3
Helixi260 – 263Combined sources4
Helixi266 – 279Combined sources14
Helixi287 – 290Combined sources4
Helixi292 – 304Combined sources13

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1TLTX-ray2.70A/B2-307[»]
ProteinModelPortaliP75931.
SMRiP75931.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP75931.

Family & Domainsi

Sequence similaritiesi

Belongs to the Gfo/Idh/MocA family.Curated

Phylogenomic databases

eggNOGiENOG4105EP9. Bacteria.
COG0673. LUCA.
HOGENOMiHOG000039102.
InParanoidiP75931.
KOiK03810.
OMAiVCQQYRI.
PhylomeDBiP75931.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
IPR000683. Oxidoreductase_N.
[Graphical view]
PfamiPF01408. GFO_IDH_MocA. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.

Sequencei

Sequence statusi: Complete.

P75931-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKLRIGVVG LGGIAQKAWL PVLAAASDWT LQGAWSPTRA KALPICESWR
60 70 80 90 100
IPYADSLSSL AASCDAVFVH SSTASHFDVV STLLNAGVHV CVDKPLAENL
110 120 130 140 150
RDAERLVELA ARKKLTLMVG FNRRFAPLYG ELKTQLATAA SLRMDKHRSN
160 170 180 190 200
SVGPHDLYFT LLDDYLHVVD TALWLSGGKA SLDGGTLLTN DAGEMLFAEH
210 220 230 240 250
HFSAGPLQIT TCMHRRAGSQ RETVQAVTDG ALIDITDMRE WREERGQGVV
260 270 280 290 300
HKPIPGWQST LEQRGFVGCA RHFIECVQNQ TVPQTAGEQA VLAQRIVDKI

WRDAMSE
Length:307
Mass (Da):33,682
Last modified:February 1, 1997 - v1
Checksum:iE8BB622AE0C5C92C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74152.1.
AP009048 Genomic DNA. Translation: BAA35876.1.
PIRiA64850.
RefSeqiNP_415586.1. NC_000913.3.
WP_000736158.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74152; AAC74152; b1068.
BAA35876; BAA35876; BAA35876.
GeneIDi945204.
KEGGiecj:JW1055.
eco:b1068.
PATRICi32117375. VBIEscCol129921_1110.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74152.1.
AP009048 Genomic DNA. Translation: BAA35876.1.
PIRiA64850.
RefSeqiNP_415586.1. NC_000913.3.
WP_000736158.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1TLTX-ray2.70A/B2-307[»]
ProteinModelPortaliP75931.
SMRiP75931.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259403. 14 interactors.
IntActiP75931. 3 interactors.
STRINGi511145.b1068.

Proteomic databases

EPDiP75931.
PaxDbiP75931.
PRIDEiP75931.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74152; AAC74152; b1068.
BAA35876; BAA35876; BAA35876.
GeneIDi945204.
KEGGiecj:JW1055.
eco:b1068.
PATRICi32117375. VBIEscCol129921_1110.

Organism-specific databases

EchoBASEiEB3638.
EcoGeneiEG13879. yceM.

Phylogenomic databases

eggNOGiENOG4105EP9. Bacteria.
COG0673. LUCA.
HOGENOMiHOG000039102.
InParanoidiP75931.
KOiK03810.
OMAiVCQQYRI.
PhylomeDBiP75931.

Enzyme and pathway databases

BioCyciEcoCyc:G6560-MONOMER.
ECOL316407:JW1055-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP75931.
PROiP75931.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
IPR000683. Oxidoreductase_N.
[Graphical view]
PfamiPF01408. GFO_IDH_MocA. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYCEM_ECOLI
AccessioniPrimary (citable) accession number: P75931
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 115 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.