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Protein

Uncharacterized protein YmdA

Gene

ymdA

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6549-MONOMER.
ECOL316407:JW1031-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YmdA
Gene namesi
Name:ymdA
Ordered Locus Names:b1044, JW1031
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13873. ymdA.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222Sequence analysisAdd
BLAST
Chaini23 – 10381Uncharacterized protein YmdAPRO_0000013819Add
BLAST

Proteomic databases

PaxDbiP75917.

Expressioni

Inductioni

Under control of the CsgD transcription factor, part of the csgBAC/ymdA operon.1 Publication

Interactioni

Protein-protein interaction databases

STRINGi511145.b1044.

Structurei

3D structure databases

ProteinModelPortaliP75917.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To the N-terminal of the FimA/PapA family of fimbria proteins.Curated

Keywords - Domaini

Signal

Phylogenomic databases

HOGENOMiHOG000118973.
OMAiSMKYLNP.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P75917-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFRPFLNSLM LGSLFFPFIA IAGSTVQGGV IHFYGQIVEP ACDVSTQSSP
60 70 80 90 100
VEMNCPQNGS IPGKTYSSKA LMSGNVKNAQ IASVKVQYLD KQKKLAVMNI

EYN
Length:103
Mass (Da):11,194
Last modified:February 1, 1997 - v1
Checksum:iC3B399F51D0CA1B5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74128.1.
AP009048 Genomic DNA. Translation: BAA35834.1.
PIRiA64847.
RefSeqiNP_415562.1. NC_000913.3.
WP_000489587.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74128; AAC74128; b1044.
BAA35834; BAA35834; BAA35834.
GeneIDi949012.
KEGGiecj:JW1031.
eco:b1044.
PATRICi32117325. VBIEscCol129921_1085.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74128.1.
AP009048 Genomic DNA. Translation: BAA35834.1.
PIRiA64847.
RefSeqiNP_415562.1. NC_000913.3.
WP_000489587.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP75917.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi511145.b1044.

Proteomic databases

PaxDbiP75917.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74128; AAC74128; b1044.
BAA35834; BAA35834; BAA35834.
GeneIDi949012.
KEGGiecj:JW1031.
eco:b1044.
PATRICi32117325. VBIEscCol129921_1085.

Organism-specific databases

EchoBASEiEB3632.
EcoGeneiEG13873. ymdA.

Phylogenomic databases

HOGENOMiHOG000118973.
OMAiSMKYLNP.

Enzyme and pathway databases

BioCyciEcoCyc:G6549-MONOMER.
ECOL316407:JW1031-MONOMER.

Miscellaneous databases

PROiP75917.

Family and domain databases

ProtoNetiSearch...

Entry informationi

Entry nameiYMDA_ECOLI
AccessioniPrimary (citable) accession number: P75917
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: February 1, 1997
Last modified: September 7, 2016
This is version 98 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.