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Protein

Inner membrane protein YcdZ

Gene

ycdZ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6542-MONOMER.
ECOL316407:JW5147-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YcdZ
Gene namesi
Name:ycdZ
Ordered Locus Names:b1036, JW5147
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13872. ycdZ.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 2CytoplasmicSequence analysis2
Transmembranei3 – 23HelicalSequence analysisAdd BLAST21
Topological domaini24PeriplasmicSequence analysis1
Transmembranei25 – 45HelicalSequence analysisAdd BLAST21
Topological domaini46 – 48CytoplasmicSequence analysis3
Transmembranei49 – 69HelicalSequence analysisAdd BLAST21
Topological domaini70 – 71PeriplasmicSequence analysis2
Transmembranei72 – 92HelicalSequence analysisAdd BLAST21
Topological domaini93 – 98CytoplasmicSequence analysis6
Transmembranei99 – 119HelicalSequence analysisAdd BLAST21
Topological domaini120 – 122PeriplasmicSequence analysis3
Transmembranei123 – 143HelicalSequence analysisAdd BLAST21
Topological domaini144 – 163CytoplasmicSequence analysisAdd BLAST20

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001688081 – 163Inner membrane protein YcdZAdd BLAST163

Proteomic databases

PaxDbiP75916.
PRIDEiP75916.

Interactioni

Protein-protein interaction databases

BioGridi4260063. 5 interactors.
STRINGi511145.b1036.

Structurei

3D structure databases

ProteinModelPortaliP75916.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To E.coli YahC.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108UQ5. Bacteria.
ENOG4111GJZ. LUCA.
HOGENOMiHOG000284435.
OMAiWGWVAIS.

Family and domain databases

InterProiIPR009476. DUF1097.
[Graphical view]
PfamiPF06496. DUF1097. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P75916-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNILLSIAIT TGILSGIWGW VAVSLGLLSW AGFLGCTAYF ACPQGGLKGL
60 70 80 90 100
AISAATLLSG VVWAMVIIYG SALAPHLEIL GYVITGIVAF LMCIQAKQLL
110 120 130 140 150
LSFVPGTFIG ACATFAGQGD WKLVLPSLAL GLIFGYAMKN SGLWLAARSA
160
KTAHREQEIK NKA
Length:163
Mass (Da):17,074
Last modified:April 27, 2001 - v2
Checksum:i999BE93A1FE35B68
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74120.2.
AP009048 Genomic DNA. Translation: BAA35817.2.
PIRiA64846.
RefSeqiNP_415554.4. NC_000913.3.
WP_001300785.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74120; AAC74120; b1036.
BAA35817; BAA35817; BAA35817.
GeneIDi945617.
KEGGiecj:JW5147.
eco:b1036.
PATRICi32117305. VBIEscCol129921_1075.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74120.2.
AP009048 Genomic DNA. Translation: BAA35817.2.
PIRiA64846.
RefSeqiNP_415554.4. NC_000913.3.
WP_001300785.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP75916.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260063. 5 interactors.
STRINGi511145.b1036.

Proteomic databases

PaxDbiP75916.
PRIDEiP75916.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74120; AAC74120; b1036.
BAA35817; BAA35817; BAA35817.
GeneIDi945617.
KEGGiecj:JW5147.
eco:b1036.
PATRICi32117305. VBIEscCol129921_1075.

Organism-specific databases

EchoBASEiEB3631.
EcoGeneiEG13872. ycdZ.

Phylogenomic databases

eggNOGiENOG4108UQ5. Bacteria.
ENOG4111GJZ. LUCA.
HOGENOMiHOG000284435.
OMAiWGWVAIS.

Enzyme and pathway databases

BioCyciEcoCyc:G6542-MONOMER.
ECOL316407:JW5147-MONOMER.

Miscellaneous databases

PROiP75916.

Family and domain databases

InterProiIPR009476. DUF1097.
[Graphical view]
PfamiPF06496. DUF1097. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYCDZ_ECOLI
AccessioniPrimary (citable) accession number: P75916
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: April 27, 2001
Last modified: November 2, 2016
This is version 104 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.