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Protein

Chaperone protein YcdY

Gene

ycdY

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Acts as a chaperone that increases YcdX activity, maybe by facilitating the correct insertion of the zinc ions into the catalytic site of YcdX. Involved in the swarming motility process.1 Publication

Miscellaneous

Does not bind zinc.

GO - Biological processi

  • bacterial-type flagellum-dependent swarming motility Source: EcoCyc
  • cellular response to DNA damage stimulus Source: EcoliWiki

Keywordsi

Molecular functionChaperone

Enzyme and pathway databases

BioCyciEcoCyc:G6541-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Chaperone protein YcdY
Gene namesi
Name:ycdY
Ordered Locus Names:b1035, JW1018
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13871. ycdY.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc

Pathology & Biotechi

Disruption phenotypei

Mutants show no swarming ability.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002116571 – 184Chaperone protein YcdYAdd BLAST184

Proteomic databases

PaxDbiP75915.
PRIDEiP75915.

Interactioni

Subunit structurei

Interacts with YcdX.1 Publication

Binary interactionsi

WithEntry#Exp.IntActNotes
ycdXP759142EBI-1121634,EBI-1121626

Protein-protein interaction databases

BioGridi4260062. 9 interactors.
DIPiDIP-11519N.
IntActiP75915. 7 interactors.
STRINGi316385.ECDH10B_1107.

Structurei

3D structure databases

ProteinModelPortaliP75915.
SMRiP75915.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the TorD/DmsD family.Curated

Phylogenomic databases

eggNOGiENOG4107XHZ. Bacteria.
COG3381. LUCA.
HOGENOMiHOG000118928.
InParanoidiP75915.
PhylomeDBiP75915.

Family and domain databases

Gene3Di1.10.3480.10. 1 hit.
InterProiView protein in InterPro
IPR026269. DmsD-type.
IPR020945. DMSO/NO3_reduct_chaperone.
PfamiView protein in Pfam
PF02613. Nitrate_red_del. 1 hit.
PIRSFiPIRSF004690. DmsD. 1 hit.
SUPFAMiSSF89155. SSF89155. 1 hit.

Sequencei

Sequence statusi: Complete.

P75915-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNEFSILCRV LGSLYYRQPQ DPLLVPLFTL IREGKLAANW PLEQDELLTR
60 70 80 90 100
LQKSCDMTQV SADYNALFIG DECAVPPYRS AWVEGATEAE VRAFLSERGM
110 120 130 140 150
PLADTPADHI GTLLLAASWL EDQSTEDESE ALETLFSEYL LPWCGAFLGK
160 170 180
VEAHATTPFW RTMAPLTRDA ISAMWDELEE DSEE
Length:184
Mass (Da):20,724
Last modified:February 1, 1997 - v1
Checksum:i1227878F6A00557E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74119.1.
AP009048 Genomic DNA. Translation: BAA35816.1.
PIRiH64845.
RefSeqiNP_415553.1. NC_000913.3.
WP_001001921.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74119; AAC74119; b1035.
BAA35816; BAA35816; BAA35816.
GeneIDi945609.
KEGGiecj:JW1018.
eco:b1035.
PATRICifig|1411691.4.peg.1236.

Similar proteinsi

Entry informationi

Entry nameiYCDY_ECOLI
AccessioniPrimary (citable) accession number: P75915
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: August 30, 2017
This is version 110 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families