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Protein

Uncharacterized lipoprotein GfcD

Gene

gfcD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6505-MONOMER.
ECOL316407:JW0967-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized lipoprotein GfcD
Alternative name(s):
Group 4 capsule protein D homolog
Gene namesi
Name:gfcD
Synonyms:ymcA
Ordered Locus Names:b0984, JW0967
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13729. gfcD.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1818PROSITE-ProRule annotationAdd
BLAST
Chaini19 – 698680Uncharacterized lipoprotein GfcDPRO_0000018057Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Lipidationi19 – 191N-palmitoyl cysteinePROSITE-ProRule annotation
Lipidationi19 – 191S-diacylglycerol cysteinePROSITE-ProRule annotation

Keywords - PTMi

Lipoprotein, Palmitate

Proteomic databases

PaxDbiP75882.
PRIDEiP75882.

Interactioni

Protein-protein interaction databases

BioGridi4261409. 172 interactions.
DIPiDIP-12707N.
IntActiP75882. 10 interactions.
MINTiMINT-1312700.
STRINGi511145.b0984.

Structurei

3D structure databases

ProteinModelPortaliP75882.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105E3R. Bacteria.
ENOG410XQV2. LUCA.
HOGENOMiHOG000280356.
OMAiSGEMLWK.
OrthoDBiEOG6T1WMQ.

Family and domain databases

InterProiIPR010344. YbjH.
[Graphical view]
PfamiPF06082. YjbH. 1 hit.
[Graphical view]
PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P75882-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKNSYLLSC LAIAVSSACH AEVLTYPDPL GSSQSDFGGT GLLQMPNARI
60 70 80 90 100
APEGEFSVNY RDNDQYRFYS TSVALFPWLE GTIRYTDVRT RKYSQWEDFS
110 120 130 140 150
GDQSYKDKSF DFKLRLWEEG YWLPQVAFGK RDIAGTGLFD GEYLVASKQA
160 170 180 190 200
GPFDFTLGMA WGYAGNAGNI TNPFCRVSDK YCHRAESHDA GDISFSDIFR
210 220 230 240 250
GPASIFGGIE YQTPWNPLRL KLEYDGNNYQ NDFAGKLPQA SHFNVGAVYR
260 270 280 290 300
AASWADLNLS YERGNTLMFG FTLRTNFNDL RPALRDTPKP AYQPAPESEG
310 320 330 340 350
LQYTTVANQL TALKYNAGFD APEIQLRDKT LYMSGQQYKY RDSREAVDRA
360 370 380 390 400
NRILVNNLPQ GVEKISVTQK REHMAMVTTE TDVASLRKQL AGTAPGQSEP
410 420 430 440 450
LQQQRVEAED LSAFGRGYRI REDRFSYSFN PTLSQSLGGP EDFYMFQLGL
460 470 480 490 500
MSSARYWFTD HLLLDGGIFT NIYNNYDKFK SSLLPADSTL PRVRTHIRDY
510 520 530 540 550
VRNDVYLNNL QANYFADLGN GFYGQVYGGY LETMYAGVGS ELLYRPLDAC
560 570 580 590 600
WALGVDVNYV KQRDWDNMMR FTDYSTPTGF VTAYWNPPTL NGVLMKLSVG
610 620 630 640 650
QYLAKDKGAT IDVAKRFDSG VAVGVWAAIS NVSKDDYGEG GFSKGFYISI
660 670 680 690
PFDLMTIGPN RNRAVVSWTP LTRDGGQMLS RKYQLYPMTA EREVPVGQ
Length:698
Mass (Da):78,687
Last modified:February 1, 1997 - v1
Checksum:i37F71D2DC57FA4E7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74069.1.
AP009048 Genomic DNA. Translation: BAA35749.1.
PIRiF64839.
RefSeqiNP_415504.1. NC_000913.3.
WP_000742328.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74069; AAC74069; b0984.
BAA35749; BAA35749; BAA35749.
GeneIDi945588.
KEGGiecj:JW0967.
eco:b0984.
PATRICi32117191. VBIEscCol129921_1019.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74069.1.
AP009048 Genomic DNA. Translation: BAA35749.1.
PIRiF64839.
RefSeqiNP_415504.1. NC_000913.3.
WP_000742328.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP75882.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261409. 172 interactions.
DIPiDIP-12707N.
IntActiP75882. 10 interactions.
MINTiMINT-1312700.
STRINGi511145.b0984.

Proteomic databases

PaxDbiP75882.
PRIDEiP75882.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74069; AAC74069; b0984.
BAA35749; BAA35749; BAA35749.
GeneIDi945588.
KEGGiecj:JW0967.
eco:b0984.
PATRICi32117191. VBIEscCol129921_1019.

Organism-specific databases

EchoBASEiEB3493.
EcoGeneiEG13729. gfcD.

Phylogenomic databases

eggNOGiENOG4105E3R. Bacteria.
ENOG410XQV2. LUCA.
HOGENOMiHOG000280356.
OMAiSGEMLWK.
OrthoDBiEOG6T1WMQ.

Enzyme and pathway databases

BioCyciEcoCyc:G6505-MONOMER.
ECOL316407:JW0967-MONOMER.

Miscellaneous databases

PROiP75882.

Family and domain databases

InterProiIPR010344. YbjH.
[Graphical view]
PfamiPF06082. YjbH. 1 hit.
[Graphical view]
PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiGFCD_ECOLI
AccessioniPrimary (citable) accession number: P75882
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: January 20, 2016
This is version 113 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

In E.coli K12 / MG1655 and K12 / W3110 this operon is silenced by an IS1D insertion in the promoter region.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.