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Protein

Uncharacterized protein YcbX

Gene

ycbX

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • toxin catabolic process Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G6487-MONOMER.
ECOL316407:JW5126-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YcbX
Gene namesi
Name:ycbX
Ordered Locus Names:b0947, JW5126
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13716. ycbX.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 369369Uncharacterized protein YcbXPRO_0000201311Add
BLAST

Proteomic databases

EPDiP75863.
PaxDbiP75863.
PRIDEiP75863.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
cysJP380384EBI-544422,EBI-544440

Protein-protein interaction databases

BioGridi4260024. 897 interactions.
DIPiDIP-28068N.
IntActiP75863. 3 interactions.
STRINGi511145.b0947.

Structurei

3D structure databases

ProteinModelPortaliP75863.
SMRiP75863. Positions 306-363.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini115 – 264150MOSCPROSITE-ProRule annotationAdd
BLAST
Domaini289 – 369812Fe-2S ferredoxin-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 2Fe-2S ferredoxin-type domain.PROSITE-ProRule annotation
Contains 1 MOSC domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105QVC. Bacteria.
COG0633. LUCA.
COG3217. LUCA.
HOGENOMiHOG000180195.
InParanoidiP75863.
KOiK07140.
OMAiYPLKSAR.
OrthoDBiEOG6GJC0W.
PhylomeDBiP75863.

Family and domain databases

Gene3Di3.10.20.30. 1 hit.
InterProiIPR001041. 2Fe-2S_ferredoxin-type.
IPR006058. 2Fe2S_fd_BS.
IPR012675. Beta-grasp_dom.
IPR005302. MoCF_Sase_C.
IPR005303. MOSC_N.
IPR011037. Pyrv_Knase-like_insert_dom.
[Graphical view]
PfamiPF00111. Fer2. 1 hit.
PF03473. MOSC. 1 hit.
PF03476. MOSC_N. 1 hit.
[Graphical view]
SUPFAMiSSF50800. SSF50800. 2 hits.
SSF54292. SSF54292. 1 hit.
PROSITEiPS00197. 2FE2S_FER_1. 1 hit.
PS51085. 2FE2S_FER_2. 1 hit.
PS51340. MOSC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P75863-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATLIRLFIH PVKSMRGIGL THALADVSGL AFDRIFMITE PDGTFITARQ
60 70 80 90 100
FPQMVRFTPS PVHDGLHLTA PDGSSAYVRF ADFATQDAPT EVWGTHFTAR
110 120 130 140 150
IAPDAINKWL SGFFSREVQL RWVGPQMTRR VKRHNTVPLS FADGYPYLLA
160 170 180 190 200
NEASLRDLQQ RCPASVKMEQ FRPNLVVSGA SAWEEDRWKV IRIGDVVFDV
210 220 230 240 250
VKPCSRCIFT TVSPEKGQKH PAGEPLKTLQ SFRTAQDNGD VDFGQNLIAR
260 270 280 290 300
NSGVIRVGDE VEILATAPAK IYGAAAADDT ANITQQPDAN VDIDWQGQAF
310 320 330 340 350
RGNNQQVLLE QLENQGIRIP YSCRAGICGS CRVQLLEGEV TPLKKSAMGD
360
DGTILCCSCV PKTALKLAR
Length:369
Mass (Da):40,644
Last modified:February 1, 1997 - v1
Checksum:i43C8F2BCC25018AA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74033.1.
AP009048 Genomic DNA. Translation: BAA35702.2.
PIRiB64835.
RefSeqiNP_415467.1. NC_000913.3.
WP_000212426.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74033; AAC74033; b0947.
BAA35702; BAA35702; BAA35702.
GeneIDi945563.
KEGGiecj:JW5126.
eco:b0947.
PATRICi32117113. VBIEscCol129921_0981.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74033.1.
AP009048 Genomic DNA. Translation: BAA35702.2.
PIRiB64835.
RefSeqiNP_415467.1. NC_000913.3.
WP_000212426.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP75863.
SMRiP75863. Positions 306-363.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260024. 897 interactions.
DIPiDIP-28068N.
IntActiP75863. 3 interactions.
STRINGi511145.b0947.

Proteomic databases

EPDiP75863.
PaxDbiP75863.
PRIDEiP75863.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74033; AAC74033; b0947.
BAA35702; BAA35702; BAA35702.
GeneIDi945563.
KEGGiecj:JW5126.
eco:b0947.
PATRICi32117113. VBIEscCol129921_0981.

Organism-specific databases

EchoBASEiEB3480.
EcoGeneiEG13716. ycbX.

Phylogenomic databases

eggNOGiENOG4105QVC. Bacteria.
COG0633. LUCA.
COG3217. LUCA.
HOGENOMiHOG000180195.
InParanoidiP75863.
KOiK07140.
OMAiYPLKSAR.
OrthoDBiEOG6GJC0W.
PhylomeDBiP75863.

Enzyme and pathway databases

BioCyciEcoCyc:G6487-MONOMER.
ECOL316407:JW5126-MONOMER.

Miscellaneous databases

PROiP75863.

Family and domain databases

Gene3Di3.10.20.30. 1 hit.
InterProiIPR001041. 2Fe-2S_ferredoxin-type.
IPR006058. 2Fe2S_fd_BS.
IPR012675. Beta-grasp_dom.
IPR005302. MoCF_Sase_C.
IPR005303. MOSC_N.
IPR011037. Pyrv_Knase-like_insert_dom.
[Graphical view]
PfamiPF00111. Fer2. 1 hit.
PF03473. MOSC. 1 hit.
PF03476. MOSC_N. 1 hit.
[Graphical view]
SUPFAMiSSF50800. SSF50800. 2 hits.
SSF54292. SSF54292. 1 hit.
PROSITEiPS00197. 2FE2S_FER_1. 1 hit.
PS51085. 2FE2S_FER_2. 1 hit.
PS51340. MOSC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYCBX_ECOLI
AccessioniPrimary (citable) accession number: P75863
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 27, 2002
Last sequence update: February 1, 1997
Last modified: March 16, 2016
This is version 121 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.