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Protein

Putative aliphatic sulfonates transport permease protein SsuC

Gene

ssuC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Part of a binding-protein-dependent transport system for aliphatic sulfonates. Probably responsible for the translocation of the substrate across the membrane.

GO - Biological processi

  • sulfur compound metabolic process Source: EcoliWiki
  • transport Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:YCBM-MONOMER.
ECOL316407:JW5121-MONOMER.
MetaCyc:YCBM-MONOMER.
RETL1328306-WGS:GSTH-6778-MONOMER.

Protein family/group databases

TCDBi3.A.1.17.10. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative aliphatic sulfonates transport permease protein SsuC
Gene namesi
Name:ssuC
Synonyms:ycbM
Ordered Locus Names:b0934, JW5121
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13705. ssuC.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 1313CytoplasmicSequence analysisAdd
BLAST
Transmembranei14 – 3421HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini35 – 439PeriplasmicSequence analysis
Transmembranei44 – 6421HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini65 – 684CytoplasmicSequence analysis
Transmembranei69 – 8921HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini90 – 10213PeriplasmicSequence analysisAdd
BLAST
Transmembranei103 – 12220HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini123 – 1253CytoplasmicSequence analysis
Transmembranei126 – 14823HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini149 – 16416PeriplasmicSequence analysisAdd
BLAST
Transmembranei165 – 18521HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini186 – 1872CytoplasmicSequence analysis
Transmembranei188 – 20821HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini209 – 2179PeriplasmicSequence analysis
Transmembranei218 – 23821HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini239 – 26325CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 263263Putative aliphatic sulfonates transport permease protein SsuCPRO_0000060228Add
BLAST

Proteomic databases

PaxDbiP75851.
PRIDEiP75851.

Interactioni

Protein-protein interaction databases

BioGridi4260017. 10 interactions.
STRINGi511145.b0934.

Structurei

3D structure databases

ProteinModelPortaliP75851.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini58 – 242185ABC transmembrane type-1PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 ABC transmembrane type-1 domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105EFS. Bacteria.
COG0600. LUCA.
HOGENOMiHOG000134230.
InParanoidiP75851.
KOiK15554.
OMAiYHGIRNI.
OrthoDBiEOG6MD92H.
PhylomeDBiP75851.

Family and domain databases

Gene3Di1.10.3720.10. 1 hit.
InterProiIPR000515. MetI-like.
[Graphical view]
PfamiPF00528. BPD_transp_1. 1 hit.
[Graphical view]
SUPFAMiSSF161098. SSF161098. 1 hit.
PROSITEiPS50928. ABC_TM1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P75851-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATPVKKWLL RVAPWFLPVG IVAVWQLASS VGWLSTRILP SPEGVVTAFW
60 70 80 90 100
TLSASGELWQ HLAISSWRAL IGFSIGGSLG LILGLISGLS RWGERLLDTS
110 120 130 140 150
IQMLRNVPHL ALIPLVILWF GIDESAKIFL VALGTLFPIY INTWHGIRNI
160 170 180 190 200
DRGLVEMARS YGLSGIPLFI HVILPGALPS IMVGVRFALG LMWLTLIVAE
210 220 230 240 250
TISANSGIGY LAMNAREFLQ TDVVVVAIIL YALLGKLADV SAQLLERLWL
260
RWNPAYHLKE ATV
Length:263
Mass (Da):28,925
Last modified:December 15, 1998 - v2
Checksum:iDF84985E95116FA2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ237695 Genomic DNA. Translation: CAB40392.1.
U00096 Genomic DNA. Translation: AAC74020.2.
AP009048 Genomic DNA. Translation: BAA35689.2.
PIRiE64833.
RefSeqiNP_415454.4. NC_000913.3.
WP_000235203.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74020; AAC74020; b0934.
BAA35689; BAA35689; BAA35689.
GeneIDi947216.
KEGGiecj:JW5121.
eco:b0934.
PATRICi32117087. VBIEscCol129921_0968.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ237695 Genomic DNA. Translation: CAB40392.1.
U00096 Genomic DNA. Translation: AAC74020.2.
AP009048 Genomic DNA. Translation: BAA35689.2.
PIRiE64833.
RefSeqiNP_415454.4. NC_000913.3.
WP_000235203.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP75851.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260017. 10 interactions.
STRINGi511145.b0934.

Protein family/group databases

TCDBi3.A.1.17.10. the atp-binding cassette (abc) superfamily.

Proteomic databases

PaxDbiP75851.
PRIDEiP75851.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74020; AAC74020; b0934.
BAA35689; BAA35689; BAA35689.
GeneIDi947216.
KEGGiecj:JW5121.
eco:b0934.
PATRICi32117087. VBIEscCol129921_0968.

Organism-specific databases

EchoBASEiEB3469.
EcoGeneiEG13705. ssuC.

Phylogenomic databases

eggNOGiENOG4105EFS. Bacteria.
COG0600. LUCA.
HOGENOMiHOG000134230.
InParanoidiP75851.
KOiK15554.
OMAiYHGIRNI.
OrthoDBiEOG6MD92H.
PhylomeDBiP75851.

Enzyme and pathway databases

BioCyciEcoCyc:YCBM-MONOMER.
ECOL316407:JW5121-MONOMER.
MetaCyc:YCBM-MONOMER.
RETL1328306-WGS:GSTH-6778-MONOMER.

Miscellaneous databases

PROiP75851.

Family and domain databases

Gene3Di1.10.3720.10. 1 hit.
InterProiIPR000515. MetI-like.
[Graphical view]
PfamiPF00528. BPD_transp_1. 1 hit.
[Graphical view]
SUPFAMiSSF161098. SSF161098. 1 hit.
PROSITEiPS50928. ABC_TM1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The Escherichia coli ssuEADCB gene cluster is required for the utilization of sulfur from aliphatic sulfonates and is regulated by the transcriptional activator Cbl."
    Van der Ploeg J.R., Iwanicka-Nowicka R., Bykowski T., Hryniewicz M.M., Leisinger T.
    J. Biol. Chem. 274:29358-29365(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "Rapid topology mapping of Escherichia coli inner-membrane proteins by prediction and PhoA/GFP fusion analysis."
    Drew D., Sjoestrand D., Nilsson J., Urbig T., Chin C.-N., de Gier J.-W., von Heijne G.
    Proc. Natl. Acad. Sci. U.S.A. 99:2690-2695(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY.
    Strain: K12 / JM109 / ATCC 53323.
  6. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiSSUC_ECOLI
AccessioniPrimary (citable) accession number: P75851
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: December 15, 1998
Last modified: February 17, 2016
This is version 118 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.