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Protein

Uncharacterized protein YbjD

Gene

ybjD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi29 – 36ATPSequence analysis8

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciEcoCyc:G6459-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbjD
Gene namesi
Name:ybjD
Ordered Locus Names:b0876, JW0860
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13425 ybjD

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001687361 – 552Uncharacterized protein YbjDAdd BLAST552

Proteomic databases

PaxDbiP75828
PRIDEiP75828

Interactioni

Protein-protein interaction databases

BioGridi4260001, 56 interactors
DIPiDIP-11446N
IntActiP75828, 6 interactors
STRINGi316385.ECDH10B_0946

Structurei

3D structure databases

ProteinModelPortaliP75828
SMRiP75828
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini379 – 469ToprimPROSITE-ProRule annotationAdd BLAST91

Phylogenomic databases

eggNOGiENOG4105CPB Bacteria
COG3593 LUCA
HOGENOMiHOG000278298
InParanoidiP75828
KOiK07459
OMAiMNMRRVI

Family and domain databases

CDDicd01026 TOPRIM_OLD, 1 hit
InterProiView protein in InterPro
IPR022602 DUF2813
IPR027417 P-loop_NTPase
IPR006171 TOPRIM_domain
IPR034139 TOPRIM_OLD
PfamiView protein in Pfam
PF11398 DUF2813, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
PROSITEiView protein in PROSITE
PS50880 TOPRIM, 1 hit

Sequencei

Sequence statusi: Complete.

P75828-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MILERVEIVG FRGINRLSLM LEQNNVLIGE NAWGKSSLLD ALTLLLSPES
60 70 80 90 100
DLYHFERDDF WFPPGDINGR EHHLHIILTF RESLPGRHRV RRYRPLEACW
110 120 130 140 150
TPCTDGYHRI FYRLEGESAE DGSVMTLRSF LDKDGHPIDV EDINDQARHL
160 170 180 190 200
VRLMPVLRLR DARFMRRIRN GTVPNVPNVE VTARQLDFLA RELSSHPQNL
210 220 230 240 250
SDGQIRQGLS AMVQLLEHYF SEQGAGQARY RLMRRRASNE QRSWRYLDII
260 270 280 290 300
NRMIDRPGGR SYRVILLGLF ATLLQAKGTL RLDKDARPLL LIEDPETRLH
310 320 330 340 350
PIMLSVAWHL LNLLPLQRIA TTNSGELLSL TPVEHVCRLV RESSRVAAWR
360 370 380 390 400
LGPSGLSTED SRRISFHIRF NRPSSLFARC WLLVEGETET WVINELARQC
410 420 430 440 450
GHHFDAEGIK VIEFAQSGLK PLVKFARRMG IEWHVLVDGD EAGKKYAATV
460 470 480 490 500
RSLLNNDREA EREHLTALPA LDMEHFMYRQ GFSDVFHRMA QIPENVPMNL
510 520 530 540 550
RKIISKAIHR SSKPDLAIEV AMEAGRRGVD SVPTLLKKMF SRVLWLARGR

AD
Length:552
Mass (Da):63,589
Last modified:February 1, 1997 - v1
Checksum:i969D8AB605C923A0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC73963.1
AP009048 Genomic DNA Translation: BAA35594.1
PIRiD64826
RefSeqiNP_415397.1, NC_000913.3
WP_000599802.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC73963; AAC73963; b0876
BAA35594; BAA35594; BAA35594
GeneIDi945498
KEGGiecj:JW0860
eco:b0876
PATRICifig|511145.12.peg.905

Similar proteinsi

Entry informationi

Entry nameiYBJD_ECOLI
AccessioniPrimary (citable) accession number: P75828
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: March 28, 2018
This is version 113 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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