P75828 (YBJD_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Uncharacterized protein YbjD

Gene names

Name:	ybjD
Ordered Locus Names:	b0876, JW0860

Organism

Escherichia coli (strain K12) [Reference proteome] [HAMAP]

Taxonomic identifier

83333 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia › Escherichia coli

Protein attributes

Sequence length	552 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 Toprim domain.

Ontologies

Keywords
Ligand	ATP-binding Nucleotide-binding
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Molecular_function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 552	552	Uncharacterized protein YbjD		PRO_0000168736
Regions
	Domain	379 – 469	91	Toprim
	Nucleotide binding	29 – 36	8	ATP Potential

Sequences

	Sequence		Length	Mass (Da)
	P75828 [UniParc]. Last modified February 1, 1997. Version 1. Checksum: 969D8AB605C923A0	FASTA	552	63,589
	10 20 30 40 50 60 MILERVEIVG FRGINRLSLM LEQNNVLIGE NAWGKSSLLD ALTLLLSPES DLYHFERDDF 70 80 90 100 110 120 WFPPGDINGR EHHLHIILTF RESLPGRHRV RRYRPLEACW TPCTDGYHRI FYRLEGESAE 130 140 150 160 170 180 DGSVMTLRSF LDKDGHPIDV EDINDQARHL VRLMPVLRLR DARFMRRIRN GTVPNVPNVE 190 200 210 220 230 240 VTARQLDFLA RELSSHPQNL SDGQIRQGLS AMVQLLEHYF SEQGAGQARY RLMRRRASNE 250 260 270 280 290 300 QRSWRYLDII NRMIDRPGGR SYRVILLGLF ATLLQAKGTL RLDKDARPLL LIEDPETRLH 310 320 330 340 350 360 PIMLSVAWHL LNLLPLQRIA TTNSGELLSL TPVEHVCRLV RESSRVAAWR LGPSGLSTED 370 380 390 400 410 420 SRRISFHIRF NRPSSLFARC WLLVEGETET WVINELARQC GHHFDAEGIK VIEFAQSGLK 430 440 450 460 470 480 PLVKFARRMG IEWHVLVDGD EAGKKYAATV RSLLNNDREA EREHLTALPA LDMEHFMYRQ 490 500 510 520 530 540 GFSDVFHRMA QIPENVPMNL RKIISKAIHR SSKPDLAIEV AMEAGRRGVD SVPTLLKKMF 550 SRVLWLARGR AD

References

[1]	"A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map." Oshima T., Aiba H., Baba T., Fujita K., Hayashi K., Honjo A., Ikemoto K., Inada T., Itoh T., Kajihara M., Kanai K., Kashimoto K., Kimura S., Kitagawa M., Makino K., Masuda S., Miki T., Mizobuchi K. , Mori H., Motomura K., Nakamura Y., Nashimoto H., Nishio Y., Saito N., Sampei G., Seki Y., Tagami H., Takemoto K., Wada C., Yamamoto Y., Yano M., Horiuchi T. DNA Res. 3:137-155(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[2]	"The complete genome sequence of Escherichia coli K-12." Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y. Science 277:1453-1474(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[3]	"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110." Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T. Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U00096 Genomic DNA. Translation: AAC73963.1. AP009048 Genomic DNA. Translation: BAA35594.1.
PIR	D64826.
RefSeq	NP_415397.1. NC_000913.2. YP_489149.1. NC_007779.1.
3D structure databases
ProteinModelPortal	P75828.
SMR	P75828. Positions 3-49.
ModBase	Search...
Protein-protein interaction databases
DIP	DIP-11446N.
IntAct	P75828. 6 interactions.
STRING	511145.b0876.
Proteomic databases
PaxDb	P75828.
PRIDE	P75828.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAC73963; AAC73963; b0876. BAA35594; BAA35594; BAA35594.
GeneID	12931007. 945498.
KEGG	ecj:Y75_p0849. eco:b0876.
PATRIC	32116959. VBIEscCol129921_0905.
Organism-specific databases
EchoBASE	EB3199.
EcoGene	EG13425. ybjD.
Phylogenomic databases
eggNOG	COG3593.
HOGENOM	HOG000278298.
KO	K07459.
OMA	MIDKPGG.
ProtClustDB	CLSK869643.
Enzyme and pathway databases
BioCyc	EcoCyc:G6459-MONOMER. ECOL316407:JW0860-MONOMER.
Gene expression databases
Genevestigator	P75828.
Family and domain databases
InterPro	IPR022602. DUF2813. [Graphical view]
Pfam	PF11398. DUF2813. 1 hit. [Graphical view]
PROSITE	PS50880. TOPRIM. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

YBJD_ECOLI

Accession

Primary (citable) accession number: P75828

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 15, 1998
Last sequence update:	February 1, 1997
Last modified:	May 1, 2013
This is version 84 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program