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Protein

Uncharacterized protein YbjD

Gene

ybjD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi29 – 36ATPSequence analysis8

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciEcoCyc:G6459-MONOMER.
ECOL316407:JW0860-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbjD
Gene namesi
Name:ybjD
Ordered Locus Names:b0876, JW0860
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13425. ybjD.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001687361 – 552Uncharacterized protein YbjDAdd BLAST552

Proteomic databases

PaxDbiP75828.
PRIDEiP75828.

Interactioni

Protein-protein interaction databases

BioGridi4260001. 55 interactors.
DIPiDIP-11446N.
IntActiP75828. 6 interactors.
STRINGi511145.b0876.

Structurei

3D structure databases

ProteinModelPortaliP75828.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini379 – 469ToprimPROSITE-ProRule annotationAdd BLAST91

Sequence similaritiesi

Contains 1 Toprim domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105CPB. Bacteria.
COG3593. LUCA.
HOGENOMiHOG000278298.
InParanoidiP75828.
KOiK07459.
OMAiMNMRRVI.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR022602. DUF2813.
IPR027417. P-loop_NTPase.
IPR006171. Toprim_domain.
[Graphical view]
PfamiPF11398. DUF2813. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiPS50880. TOPRIM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P75828-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MILERVEIVG FRGINRLSLM LEQNNVLIGE NAWGKSSLLD ALTLLLSPES
60 70 80 90 100
DLYHFERDDF WFPPGDINGR EHHLHIILTF RESLPGRHRV RRYRPLEACW
110 120 130 140 150
TPCTDGYHRI FYRLEGESAE DGSVMTLRSF LDKDGHPIDV EDINDQARHL
160 170 180 190 200
VRLMPVLRLR DARFMRRIRN GTVPNVPNVE VTARQLDFLA RELSSHPQNL
210 220 230 240 250
SDGQIRQGLS AMVQLLEHYF SEQGAGQARY RLMRRRASNE QRSWRYLDII
260 270 280 290 300
NRMIDRPGGR SYRVILLGLF ATLLQAKGTL RLDKDARPLL LIEDPETRLH
310 320 330 340 350
PIMLSVAWHL LNLLPLQRIA TTNSGELLSL TPVEHVCRLV RESSRVAAWR
360 370 380 390 400
LGPSGLSTED SRRISFHIRF NRPSSLFARC WLLVEGETET WVINELARQC
410 420 430 440 450
GHHFDAEGIK VIEFAQSGLK PLVKFARRMG IEWHVLVDGD EAGKKYAATV
460 470 480 490 500
RSLLNNDREA EREHLTALPA LDMEHFMYRQ GFSDVFHRMA QIPENVPMNL
510 520 530 540 550
RKIISKAIHR SSKPDLAIEV AMEAGRRGVD SVPTLLKKMF SRVLWLARGR

AD
Length:552
Mass (Da):63,589
Last modified:February 1, 1997 - v1
Checksum:i969D8AB605C923A0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73963.1.
AP009048 Genomic DNA. Translation: BAA35594.1.
PIRiD64826.
RefSeqiNP_415397.1. NC_000913.3.
WP_000599802.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73963; AAC73963; b0876.
BAA35594; BAA35594; BAA35594.
GeneIDi945498.
KEGGiecj:JW0860.
eco:b0876.
PATRICi32116959. VBIEscCol129921_0905.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73963.1.
AP009048 Genomic DNA. Translation: BAA35594.1.
PIRiD64826.
RefSeqiNP_415397.1. NC_000913.3.
WP_000599802.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP75828.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260001. 55 interactors.
DIPiDIP-11446N.
IntActiP75828. 6 interactors.
STRINGi511145.b0876.

Proteomic databases

PaxDbiP75828.
PRIDEiP75828.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73963; AAC73963; b0876.
BAA35594; BAA35594; BAA35594.
GeneIDi945498.
KEGGiecj:JW0860.
eco:b0876.
PATRICi32116959. VBIEscCol129921_0905.

Organism-specific databases

EchoBASEiEB3199.
EcoGeneiEG13425. ybjD.

Phylogenomic databases

eggNOGiENOG4105CPB. Bacteria.
COG3593. LUCA.
HOGENOMiHOG000278298.
InParanoidiP75828.
KOiK07459.
OMAiMNMRRVI.

Enzyme and pathway databases

BioCyciEcoCyc:G6459-MONOMER.
ECOL316407:JW0860-MONOMER.

Miscellaneous databases

PROiP75828.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR022602. DUF2813.
IPR027417. P-loop_NTPase.
IPR006171. Toprim_domain.
[Graphical view]
PfamiPF11398. DUF2813. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiPS50880. TOPRIM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYBJD_ECOLI
AccessioniPrimary (citable) accession number: P75828
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.