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Protein

Uncharacterized protein YbiU

Gene

ybiU

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6424-MONOMER.
ECOL316407:JW0805-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbiU
Gene namesi
Name:ybiU
Ordered Locus Names:b0821, JW0805
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13326. ybiU.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001687281 – 421Uncharacterized protein YbiUAdd BLAST421

Proteomic databases

PaxDbiP75791.
PRIDEiP75791.

Interactioni

Protein-protein interaction databases

BioGridi4263338. 7 interactors.
DIPiDIP-11440N.
IntActiP75791. 3 interactors.
MINTiMINT-1289806.
STRINGi511145.b0821.

Structurei

Secondary structure

1421
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Turni3 – 5Combined sources3
Helixi14 – 29Combined sources16
Helixi32 – 55Combined sources24
Beta strandi63 – 65Combined sources3
Helixi66 – 71Combined sources6
Helixi76 – 85Combined sources10
Beta strandi86 – 91Combined sources6
Helixi96 – 112Combined sources17
Helixi115 – 118Combined sources4
Beta strandi136 – 138Combined sources3
Helixi144 – 150Combined sources7
Helixi153 – 163Combined sources11
Beta strandi177 – 181Combined sources5
Beta strandi188 – 190Combined sources3
Beta strandi200 – 204Combined sources5
Helixi210 – 213Combined sources4
Helixi215 – 220Combined sources6
Helixi222 – 225Combined sources4
Helixi229 – 231Combined sources3
Helixi240 – 242Combined sources3
Beta strandi259 – 267Combined sources9
Beta strandi276 – 278Combined sources3
Helixi284 – 290Combined sources7
Helixi291 – 293Combined sources3
Turni315 – 317Combined sources3
Helixi319 – 322Combined sources4
Beta strandi336 – 340Combined sources5
Beta strandi345 – 347Combined sources3
Beta strandi350 – 352Combined sources3
Beta strandi359 – 361Combined sources3
Beta strandi366 – 368Combined sources3
Helixi369 – 384Combined sources16
Helixi396 – 399Combined sources4
Helixi406 – 408Combined sources3
Helixi411 – 415Combined sources5
Turni416 – 418Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2DBIX-ray2.05A1-421[»]
2DBNX-ray1.70A1-421[»]
ProteinModelPortaliP75791.
SMRiP75791.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP75791.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG41072TH. Bacteria.
ENOG410XRA8. LUCA.
HOGENOMiHOG000160924.
InParanoidiP75791.
OMAiISEKWHP.
PhylomeDBiP75791.

Family and domain databases

Gene3Di2.60.120.330. 1 hit.
InterProiIPR010856. DUF1479.
IPR027443. IPNS-like.
[Graphical view]
PfamiPF07350. DUF1479. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P75791-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASTFTSDTL PADHKAAIRQ MKHALRAQLG DVQQIFNQLS DDIATRVAEI
60 70 80 90 100
NALKAQGDAV WPVLSYADIK AGHVTAEQRE QIKRRGCAVI KGHFPREQAL
110 120 130 140 150
GWDQSMLDYL DRNRFDEVYK GPGDNFFGTL SASRPEIYPI YWSQAQMQAR
160 170 180 190 200
QSEEMANAQS FLNRLWTFES DGKQWFNPDV SVIYPDRIRR RPPGTTSKGL
210 220 230 240 250
GAHTDSGALE RWLLPAYQRV FANVFNGNLA QYDPWHAAHR TEVEEYTVDN
260 270 280 290 300
TTKCSVFRTF QGWTALSDML PGQGLLHVVP IPEAMAYVLL RPLLDDVPED
310 320 330 340 350
ELCGVAPGRV LPVSEQWHPL LIEALTSIPK LEAGDSVWWH CDVIHSVAPV
360 370 380 390 400
ENQQGWGNVM YIPAAPMCEK NLAYAHKVKA ALEKGASPGD FPREDYETNW
410 420
EGRFTLADLN IHGKRALGMD V
Length:421
Mass (Da):47,329
Last modified:February 1, 1997 - v1
Checksum:iB3641337B6C62E48
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73908.1.
AP009048 Genomic DNA. Translation: BAA35502.1.
PIRiE64819.
RefSeqiNP_415342.1. NC_000913.3.
WP_000168797.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73908; AAC73908; b0821.
BAA35502; BAA35502; BAA35502.
GeneIDi945439.
KEGGiecj:JW0805.
eco:b0821.
PATRICi32116845. VBIEscCol129921_0848.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73908.1.
AP009048 Genomic DNA. Translation: BAA35502.1.
PIRiE64819.
RefSeqiNP_415342.1. NC_000913.3.
WP_000168797.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2DBIX-ray2.05A1-421[»]
2DBNX-ray1.70A1-421[»]
ProteinModelPortaliP75791.
SMRiP75791.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263338. 7 interactors.
DIPiDIP-11440N.
IntActiP75791. 3 interactors.
MINTiMINT-1289806.
STRINGi511145.b0821.

Proteomic databases

PaxDbiP75791.
PRIDEiP75791.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73908; AAC73908; b0821.
BAA35502; BAA35502; BAA35502.
GeneIDi945439.
KEGGiecj:JW0805.
eco:b0821.
PATRICi32116845. VBIEscCol129921_0848.

Organism-specific databases

EchoBASEiEB3110.
EcoGeneiEG13326. ybiU.

Phylogenomic databases

eggNOGiENOG41072TH. Bacteria.
ENOG410XRA8. LUCA.
HOGENOMiHOG000160924.
InParanoidiP75791.
OMAiISEKWHP.
PhylomeDBiP75791.

Enzyme and pathway databases

BioCyciEcoCyc:G6424-MONOMER.
ECOL316407:JW0805-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP75791.
PROiP75791.

Family and domain databases

Gene3Di2.60.120.330. 1 hit.
InterProiIPR010856. DUF1479.
IPR027443. IPNS-like.
[Graphical view]
PfamiPF07350. DUF1479. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYBIU_ECOLI
AccessioniPrimary (citable) accession number: P75791
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.