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Protein

Uncharacterized protein YbiU

Gene

ybiU

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6424-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbiU
Gene namesi
Name:ybiU
Ordered Locus Names:b0821, JW0805
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13326 ybiU

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001687281 – 421Uncharacterized protein YbiUAdd BLAST421

Proteomic databases

PaxDbiP75791
PRIDEiP75791

Interactioni

Protein-protein interaction databases

BioGridi4263338, 11 interactors
DIPiDIP-11440N
IntActiP75791, 3 interactors
STRINGi316385.ECDH10B_0890

Structurei

Secondary structure

1421
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Turni3 – 5Combined sources3
Helixi14 – 29Combined sources16
Helixi32 – 55Combined sources24
Beta strandi63 – 65Combined sources3
Helixi66 – 71Combined sources6
Helixi76 – 85Combined sources10
Beta strandi86 – 91Combined sources6
Helixi96 – 112Combined sources17
Helixi115 – 118Combined sources4
Beta strandi136 – 138Combined sources3
Helixi144 – 150Combined sources7
Helixi153 – 163Combined sources11
Beta strandi177 – 181Combined sources5
Beta strandi188 – 190Combined sources3
Beta strandi200 – 204Combined sources5
Helixi210 – 213Combined sources4
Helixi215 – 220Combined sources6
Helixi222 – 225Combined sources4
Helixi229 – 231Combined sources3
Helixi240 – 242Combined sources3
Beta strandi259 – 267Combined sources9
Beta strandi276 – 278Combined sources3
Helixi284 – 290Combined sources7
Helixi291 – 293Combined sources3
Turni315 – 317Combined sources3
Helixi319 – 322Combined sources4
Beta strandi336 – 340Combined sources5
Beta strandi345 – 347Combined sources3
Beta strandi350 – 352Combined sources3
Beta strandi359 – 361Combined sources3
Beta strandi366 – 368Combined sources3
Helixi369 – 384Combined sources16
Helixi396 – 399Combined sources4
Helixi406 – 408Combined sources3
Helixi411 – 415Combined sources5
Turni416 – 418Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2DBIX-ray2.05A1-421[»]
2DBNX-ray1.70A1-421[»]
ProteinModelPortaliP75791
SMRiP75791
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP75791

Family & Domainsi

Phylogenomic databases

eggNOGiENOG41072TH Bacteria
ENOG410XRA8 LUCA
HOGENOMiHOG000160924
InParanoidiP75791
OMAiISEKWHP
PhylomeDBiP75791

Family and domain databases

Gene3Di2.60.120.330, 1 hit
InterProiView protein in InterPro
IPR010856 DUF1479
IPR027443 IPNS-like
PfamiView protein in Pfam
PF07350 DUF1479, 1 hit

Sequencei

Sequence statusi: Complete.

P75791-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASTFTSDTL PADHKAAIRQ MKHALRAQLG DVQQIFNQLS DDIATRVAEI
60 70 80 90 100
NALKAQGDAV WPVLSYADIK AGHVTAEQRE QIKRRGCAVI KGHFPREQAL
110 120 130 140 150
GWDQSMLDYL DRNRFDEVYK GPGDNFFGTL SASRPEIYPI YWSQAQMQAR
160 170 180 190 200
QSEEMANAQS FLNRLWTFES DGKQWFNPDV SVIYPDRIRR RPPGTTSKGL
210 220 230 240 250
GAHTDSGALE RWLLPAYQRV FANVFNGNLA QYDPWHAAHR TEVEEYTVDN
260 270 280 290 300
TTKCSVFRTF QGWTALSDML PGQGLLHVVP IPEAMAYVLL RPLLDDVPED
310 320 330 340 350
ELCGVAPGRV LPVSEQWHPL LIEALTSIPK LEAGDSVWWH CDVIHSVAPV
360 370 380 390 400
ENQQGWGNVM YIPAAPMCEK NLAYAHKVKA ALEKGASPGD FPREDYETNW
410 420
EGRFTLADLN IHGKRALGMD V
Length:421
Mass (Da):47,329
Last modified:February 1, 1997 - v1
Checksum:iB3641337B6C62E48
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC73908.1
AP009048 Genomic DNA Translation: BAA35502.1
PIRiE64819
RefSeqiNP_415342.1, NC_000913.3
WP_000168797.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC73908; AAC73908; b0821
BAA35502; BAA35502; BAA35502
GeneIDi945439
KEGGiecj:JW0805
eco:b0821
PATRICifig|511145.12.peg.848

Similar proteinsi

Entry informationi

Entry nameiYBIU_ECOLI
AccessioniPrimary (citable) accession number: P75791
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: March 28, 2018
This is version 111 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome
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Main funding by: National Institutes of Health