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Protein

Uncharacterized protein YbiU

Gene

ybiU

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6424-MONOMER.
ECOL316407:JW0805-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbiU
Gene namesi
Name:ybiU
Ordered Locus Names:b0821, JW0805
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13326. ybiU.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 421421Uncharacterized protein YbiUPRO_0000168728Add
BLAST

Proteomic databases

PaxDbiP75791.
PRIDEiP75791.

Interactioni

Protein-protein interaction databases

BioGridi4263338. 7 interactions.
DIPiDIP-11440N.
IntActiP75791. 3 interactions.
MINTiMINT-1289806.
STRINGi511145.b0821.

Structurei

Secondary structure

1
421
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Turni3 – 53Combined sources
Helixi14 – 2916Combined sources
Helixi32 – 5524Combined sources
Beta strandi63 – 653Combined sources
Helixi66 – 716Combined sources
Helixi76 – 8510Combined sources
Beta strandi86 – 916Combined sources
Helixi96 – 11217Combined sources
Helixi115 – 1184Combined sources
Beta strandi136 – 1383Combined sources
Helixi144 – 1507Combined sources
Helixi153 – 16311Combined sources
Beta strandi177 – 1815Combined sources
Beta strandi188 – 1903Combined sources
Beta strandi200 – 2045Combined sources
Helixi210 – 2134Combined sources
Helixi215 – 2206Combined sources
Helixi222 – 2254Combined sources
Helixi229 – 2313Combined sources
Helixi240 – 2423Combined sources
Beta strandi259 – 2679Combined sources
Beta strandi276 – 2783Combined sources
Helixi284 – 2907Combined sources
Helixi291 – 2933Combined sources
Turni315 – 3173Combined sources
Helixi319 – 3224Combined sources
Beta strandi336 – 3405Combined sources
Beta strandi345 – 3473Combined sources
Beta strandi350 – 3523Combined sources
Beta strandi359 – 3613Combined sources
Beta strandi366 – 3683Combined sources
Helixi369 – 38416Combined sources
Helixi396 – 3994Combined sources
Helixi406 – 4083Combined sources
Helixi411 – 4155Combined sources
Turni416 – 4183Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2DBIX-ray2.05A1-421[»]
2DBNX-ray1.70A1-421[»]
ProteinModelPortaliP75791.
SMRiP75791. Positions 1-420.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP75791.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG41072TH. Bacteria.
ENOG410XRA8. LUCA.
HOGENOMiHOG000160924.
InParanoidiP75791.
OMAiISEKWHP.
PhylomeDBiP75791.

Family and domain databases

Gene3Di2.60.120.330. 1 hit.
InterProiIPR010856. DUF1479.
IPR027443. IPNS-like.
[Graphical view]
PfamiPF07350. DUF1479. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P75791-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASTFTSDTL PADHKAAIRQ MKHALRAQLG DVQQIFNQLS DDIATRVAEI
60 70 80 90 100
NALKAQGDAV WPVLSYADIK AGHVTAEQRE QIKRRGCAVI KGHFPREQAL
110 120 130 140 150
GWDQSMLDYL DRNRFDEVYK GPGDNFFGTL SASRPEIYPI YWSQAQMQAR
160 170 180 190 200
QSEEMANAQS FLNRLWTFES DGKQWFNPDV SVIYPDRIRR RPPGTTSKGL
210 220 230 240 250
GAHTDSGALE RWLLPAYQRV FANVFNGNLA QYDPWHAAHR TEVEEYTVDN
260 270 280 290 300
TTKCSVFRTF QGWTALSDML PGQGLLHVVP IPEAMAYVLL RPLLDDVPED
310 320 330 340 350
ELCGVAPGRV LPVSEQWHPL LIEALTSIPK LEAGDSVWWH CDVIHSVAPV
360 370 380 390 400
ENQQGWGNVM YIPAAPMCEK NLAYAHKVKA ALEKGASPGD FPREDYETNW
410 420
EGRFTLADLN IHGKRALGMD V
Length:421
Mass (Da):47,329
Last modified:February 1, 1997 - v1
Checksum:iB3641337B6C62E48
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73908.1.
AP009048 Genomic DNA. Translation: BAA35502.1.
PIRiE64819.
RefSeqiNP_415342.1. NC_000913.3.
WP_000168797.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73908; AAC73908; b0821.
BAA35502; BAA35502; BAA35502.
GeneIDi945439.
KEGGiecj:JW0805.
eco:b0821.
PATRICi32116845. VBIEscCol129921_0848.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73908.1.
AP009048 Genomic DNA. Translation: BAA35502.1.
PIRiE64819.
RefSeqiNP_415342.1. NC_000913.3.
WP_000168797.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2DBIX-ray2.05A1-421[»]
2DBNX-ray1.70A1-421[»]
ProteinModelPortaliP75791.
SMRiP75791. Positions 1-420.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263338. 7 interactions.
DIPiDIP-11440N.
IntActiP75791. 3 interactions.
MINTiMINT-1289806.
STRINGi511145.b0821.

Proteomic databases

PaxDbiP75791.
PRIDEiP75791.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73908; AAC73908; b0821.
BAA35502; BAA35502; BAA35502.
GeneIDi945439.
KEGGiecj:JW0805.
eco:b0821.
PATRICi32116845. VBIEscCol129921_0848.

Organism-specific databases

EchoBASEiEB3110.
EcoGeneiEG13326. ybiU.

Phylogenomic databases

eggNOGiENOG41072TH. Bacteria.
ENOG410XRA8. LUCA.
HOGENOMiHOG000160924.
InParanoidiP75791.
OMAiISEKWHP.
PhylomeDBiP75791.

Enzyme and pathway databases

BioCyciEcoCyc:G6424-MONOMER.
ECOL316407:JW0805-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP75791.
PROiP75791.

Family and domain databases

Gene3Di2.60.120.330. 1 hit.
InterProiIPR010856. DUF1479.
IPR027443. IPNS-like.
[Graphical view]
PfamiPF07350. DUF1479. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYBIU_ECOLI
AccessioniPrimary (citable) accession number: P75791
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: September 7, 2016
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.