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Protein

Inner membrane protein YbiR

Gene

ybiR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Biological processi

Keywordsi

Biological processTransport

Enzyme and pathway databases

BioCyciEcoCyc:G6421-MONOMER

Protein family/group databases

TCDBi2.A.45.2.5 the arsenite-antimonite (arsb) efflux family

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YbiR
Gene namesi
Name:ybiR
Ordered Locus Names:b0818, JW0802
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13323 ybiR

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 13PeriplasmicSequence analysisAdd BLAST13
Transmembranei14 – 34HelicalSequence analysisAdd BLAST21
Transmembranei35 – 55HelicalSequence analysisAdd BLAST21
Topological domaini56 – 85PeriplasmicSequence analysisAdd BLAST30
Transmembranei86 – 106HelicalSequence analysisAdd BLAST21
Topological domaini107 – 122CytoplasmicSequence analysisAdd BLAST16
Transmembranei123 – 143HelicalSequence analysisAdd BLAST21
Topological domaini144 – 155PeriplasmicSequence analysisAdd BLAST12
Transmembranei156 – 176HelicalSequence analysisAdd BLAST21
Topological domaini177 – 208CytoplasmicSequence analysisAdd BLAST32
Transmembranei209 – 229HelicalSequence analysisAdd BLAST21
Topological domaini230 – 247PeriplasmicSequence analysisAdd BLAST18
Transmembranei248 – 268HelicalSequence analysisAdd BLAST21
Topological domaini269 – 283CytoplasmicSequence analysisAdd BLAST15
Transmembranei284 – 304HelicalSequence analysisAdd BLAST21
Topological domaini305 – 309PeriplasmicSequence analysis5
Transmembranei310 – 330HelicalSequence analysisAdd BLAST21
Topological domaini331 – 348CytoplasmicSequence analysisAdd BLAST18
Transmembranei349 – 369HelicalSequence analysisAdd BLAST21
Topological domaini370 – 372PeriplasmicSequence analysis3

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001687271 – 372Inner membrane protein YbiRAdd BLAST372

Proteomic databases

PaxDbiP75788
PRIDEiP75788

Interactioni

Protein-protein interaction databases

BioGridi4261204137 interactors.
STRINGi316385.ECDH10B_0887

Structurei

3D structure databases

ProteinModelPortaliP75788
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105F4P Bacteria
COG0471 LUCA
HOGENOMiHOG000253850
InParanoidiP75788
OMAiFIAMFID
PhylomeDBiP75788

Family and domain databases

InterProiView protein in InterPro
IPR004680 Cit_transptr-like_dom
PfamiView protein in Pfam
PF03600 CitMHS, 1 hit

Sequencei

Sequence statusi: Complete.

P75788-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLPFLRTLQ GDRFFQLLIL VGIGLSFFVP FAPKSWPAAI DWHTIITLSG
60 70 80 90 100
LMLLTKGVEL SGYFDVLGRK MVRRFATERR LAMFMVLAAA LLSTFLTNDV
110 120 130 140 150
ALFIVVPLTI TLKRLCEIPV NRLIIFEALA VNAGSLLTPI GNPQNILIWG
160 170 180 190 200
RSGLSFAGFI AQMAPLAGAM MLTLLLLCWC CFPGKAMQYH TGVQTPEWKP
210 220 230 240 250
RLVWSCLGLY IVFLTALEFK QELWGLVIVA AGFALLARRV VLSVDWTLLL
260 270 280 290 300
VFMAMFIDVH LLTQLPALQG VLGNVSHLSE PGLWLTAIGL SQVISNVPST
310 320 330 340 350
ILLLNYVPPS LLLVWAVNVG GFGLLPGSLA NLIALRMAND RRIWWRFHLY
360 370
SIPMLLWAAL VGYVLLVILP AN
Length:372
Mass (Da):41,169
Last modified:February 1, 1997 - v1
Checksum:iB7D955C7FF9D1665
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC73905.1
AP009048 Genomic DNA Translation: BAA35499.1
PIRiB64819
RefSeqiNP_415339.1, NC_000913.3
WP_000056457.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC73905; AAC73905; b0818
BAA35499; BAA35499; BAA35499
GeneIDi945438
KEGGiecj:JW0802
eco:b0818
PATRICifig|1411691.4.peg.1460

Similar proteinsi

Entry informationi

Entry nameiYBIR_ECOLI
AccessioniPrimary (citable) accession number: P75788
Secondary accession number(s): Q9R7R9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: March 28, 2018
This is version 116 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome