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Protein

Inner membrane protein YbiR

Gene

ybiR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:G6421-MONOMER.
ECOL316407:JW0802-MONOMER.

Protein family/group databases

TCDBi2.A.45.2.5. the arsenite-antimonite (arsb) efflux family.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YbiR
Gene namesi
Name:ybiR
Ordered Locus Names:b0818, JW0802
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13323. ybiR.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 1313PeriplasmicSequence analysisAdd
BLAST
Transmembranei14 – 3421HelicalSequence analysisAdd
BLAST
Transmembranei35 – 5521HelicalSequence analysisAdd
BLAST
Topological domaini56 – 8530PeriplasmicSequence analysisAdd
BLAST
Transmembranei86 – 10621HelicalSequence analysisAdd
BLAST
Topological domaini107 – 12216CytoplasmicSequence analysisAdd
BLAST
Transmembranei123 – 14321HelicalSequence analysisAdd
BLAST
Topological domaini144 – 15512PeriplasmicSequence analysisAdd
BLAST
Transmembranei156 – 17621HelicalSequence analysisAdd
BLAST
Topological domaini177 – 20832CytoplasmicSequence analysisAdd
BLAST
Transmembranei209 – 22921HelicalSequence analysisAdd
BLAST
Topological domaini230 – 24718PeriplasmicSequence analysisAdd
BLAST
Transmembranei248 – 26821HelicalSequence analysisAdd
BLAST
Topological domaini269 – 28315CytoplasmicSequence analysisAdd
BLAST
Transmembranei284 – 30421HelicalSequence analysisAdd
BLAST
Topological domaini305 – 3095PeriplasmicSequence analysis
Transmembranei310 – 33021HelicalSequence analysisAdd
BLAST
Topological domaini331 – 34818CytoplasmicSequence analysisAdd
BLAST
Transmembranei349 – 36921HelicalSequence analysisAdd
BLAST
Topological domaini370 – 3723PeriplasmicSequence analysis

GO - Cellular componenti

  • integral component of membrane Source: GO_Central
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 372372Inner membrane protein YbiRPRO_0000168727Add
BLAST

Proteomic databases

PaxDbiP75788.
PRIDEiP75788.

Interactioni

Protein-protein interaction databases

BioGridi4261204. 137 interactions.
STRINGi511145.b0818.

Structurei

3D structure databases

ProteinModelPortaliP75788.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105F4P. Bacteria.
COG0471. LUCA.
HOGENOMiHOG000253850.
InParanoidiP75788.
OMAiDAIDWHT.
OrthoDBiEOG6SZ1F3.
PhylomeDBiP75788.

Family and domain databases

InterProiIPR004680. Cit_transptr-like_dom.
[Graphical view]
PfamiPF03600. CitMHS. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P75788-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLPFLRTLQ GDRFFQLLIL VGIGLSFFVP FAPKSWPAAI DWHTIITLSG
60 70 80 90 100
LMLLTKGVEL SGYFDVLGRK MVRRFATERR LAMFMVLAAA LLSTFLTNDV
110 120 130 140 150
ALFIVVPLTI TLKRLCEIPV NRLIIFEALA VNAGSLLTPI GNPQNILIWG
160 170 180 190 200
RSGLSFAGFI AQMAPLAGAM MLTLLLLCWC CFPGKAMQYH TGVQTPEWKP
210 220 230 240 250
RLVWSCLGLY IVFLTALEFK QELWGLVIVA AGFALLARRV VLSVDWTLLL
260 270 280 290 300
VFMAMFIDVH LLTQLPALQG VLGNVSHLSE PGLWLTAIGL SQVISNVPST
310 320 330 340 350
ILLLNYVPPS LLLVWAVNVG GFGLLPGSLA NLIALRMAND RRIWWRFHLY
360 370
SIPMLLWAAL VGYVLLVILP AN
Length:372
Mass (Da):41,169
Last modified:February 1, 1997 - v1
Checksum:iB7D955C7FF9D1665
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73905.1.
AP009048 Genomic DNA. Translation: BAA35499.1.
PIRiB64819.
RefSeqiNP_415339.1. NC_000913.3.
WP_000056457.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73905; AAC73905; b0818.
BAA35499; BAA35499; BAA35499.
GeneIDi945438.
KEGGiecj:JW0802.
eco:b0818.
PATRICi32116839. VBIEscCol129921_0845.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73905.1.
AP009048 Genomic DNA. Translation: BAA35499.1.
PIRiB64819.
RefSeqiNP_415339.1. NC_000913.3.
WP_000056457.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP75788.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261204. 137 interactions.
STRINGi511145.b0818.

Protein family/group databases

TCDBi2.A.45.2.5. the arsenite-antimonite (arsb) efflux family.

Proteomic databases

PaxDbiP75788.
PRIDEiP75788.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73905; AAC73905; b0818.
BAA35499; BAA35499; BAA35499.
GeneIDi945438.
KEGGiecj:JW0802.
eco:b0818.
PATRICi32116839. VBIEscCol129921_0845.

Organism-specific databases

EchoBASEiEB3107.
EcoGeneiEG13323. ybiR.

Phylogenomic databases

eggNOGiENOG4105F4P. Bacteria.
COG0471. LUCA.
HOGENOMiHOG000253850.
InParanoidiP75788.
OMAiDAIDWHT.
OrthoDBiEOG6SZ1F3.
PhylomeDBiP75788.

Enzyme and pathway databases

BioCyciEcoCyc:G6421-MONOMER.
ECOL316407:JW0802-MONOMER.

Miscellaneous databases

PROiP75788.

Family and domain databases

InterProiIPR004680. Cit_transptr-like_dom.
[Graphical view]
PfamiPF03600. CitMHS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYBIR_ECOLI
AccessioniPrimary (citable) accession number: P75788
Secondary accession number(s): Q9R7R9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: February 17, 2016
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.