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Protein

Inner membrane protein YbhN

Gene

ybhN

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6405-MONOMER.
ECOL316407:JW0771-MONOMER.

Protein family/group databases

TCDBi4.D.2.4.3. the glycosyl transferase 2 (gt2) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YbhN
Gene namesi
Name:ybhN
Ordered Locus Names:b0788, JW0771
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13670. ybhN.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 13PeriplasmicSequence analysisAdd BLAST13
Transmembranei14 – 34HelicalSequence analysisAdd BLAST21
Topological domaini35 – 50CytoplasmicSequence analysisAdd BLAST16
Transmembranei51 – 71HelicalSequence analysisAdd BLAST21
Topological domaini72 – 85PeriplasmicSequence analysisAdd BLAST14
Transmembranei86 – 106HelicalSequence analysisAdd BLAST21
Topological domaini107 – 125CytoplasmicSequence analysisAdd BLAST19
Transmembranei126 – 146HelicalSequence analysisAdd BLAST21
Topological domaini147 – 165PeriplasmicSequence analysisAdd BLAST19
Transmembranei166 – 186HelicalSequence analysisAdd BLAST21
Topological domaini187 – 205CytoplasmicSequence analysisAdd BLAST19
Transmembranei206 – 226HelicalSequence analysisAdd BLAST21
Topological domaini227 – 233PeriplasmicSequence analysis7
Transmembranei234 – 254HelicalSequence analysisAdd BLAST21
Transmembranei255 – 275HelicalSequence analysisAdd BLAST21
Topological domaini276 – 277PeriplasmicSequence analysis2
Transmembranei278 – 298HelicalSequence analysisAdd BLAST21
Topological domaini299 – 318CytoplasmicSequence analysisAdd BLAST20

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001687151 – 318Inner membrane protein YbhNAdd BLAST318

Proteomic databases

PaxDbiP75770.
PRIDEiP75770.

Interactioni

Protein-protein interaction databases

BioGridi4259655. 7 interactors.
STRINGi511145.b0788.

Structurei

3D structure databases

ProteinModelPortaliP75770.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To Synechocystis PCC 6803 slr0712.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4107UXM. Bacteria.
COG0392. LUCA.
HOGENOMiHOG000118089.
InParanoidiP75770.
KOiK07027.
OMAiKVIRNYN.
PhylomeDBiP75770.

Family and domain databases

InterProiIPR022791. L-PG_synthase/AglD.
[Graphical view]
PfamiPF03706. LPG_synthase_TM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P75770-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKSHPRWRL AKKILTWLFF IAVIVLLVVY AKKVDWEEVW KVIRDYNRVA
60 70 80 90 100
LLSAVGLVVV SYLIYGCYDL LARFYCGHKL AKRQVMLVSF ICYAFNLTLS
110 120 130 140 150
TWVGGIGMRY RLYSRLGLPG STITRIFSLS ITTNWLGYIL LAGIIFTAGV
160 170 180 190 200
VELPDHWYVD QTTLRILGIG LLMIIAVYLW FCAFAKHRHM TIKGQKLVLP
210 220 230 240 250
SWKFALAQML ISSVNWMVMG AIIWLLLGQS VNYFFVLGVL LVSSIAGVIV
260 270 280 290 300
HIPAGIGVLE AVFIALLAGE HTSKGTIIAA LLAYRVLYYF IPLLLALICY
310
LLLESQAKKL RAKNEAAM
Length:318
Mass (Da):35,860
Last modified:February 1, 1997 - v1
Checksum:iBE626A9C6B12B99C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73875.1.
AP009048 Genomic DNA. Translation: BAA35447.1.
PIRiD64815.
RefSeqiNP_415309.1. NC_000913.3.
WP_000045450.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73875; AAC73875; b0788.
BAA35447; BAA35447; BAA35447.
GeneIDi945410.
KEGGiecj:JW0771.
eco:b0788.
PATRICi32116777. VBIEscCol129921_0814.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73875.1.
AP009048 Genomic DNA. Translation: BAA35447.1.
PIRiD64815.
RefSeqiNP_415309.1. NC_000913.3.
WP_000045450.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP75770.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259655. 7 interactors.
STRINGi511145.b0788.

Protein family/group databases

TCDBi4.D.2.4.3. the glycosyl transferase 2 (gt2) family.

Proteomic databases

PaxDbiP75770.
PRIDEiP75770.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73875; AAC73875; b0788.
BAA35447; BAA35447; BAA35447.
GeneIDi945410.
KEGGiecj:JW0771.
eco:b0788.
PATRICi32116777. VBIEscCol129921_0814.

Organism-specific databases

EchoBASEiEB3434.
EcoGeneiEG13670. ybhN.

Phylogenomic databases

eggNOGiENOG4107UXM. Bacteria.
COG0392. LUCA.
HOGENOMiHOG000118089.
InParanoidiP75770.
KOiK07027.
OMAiKVIRNYN.
PhylomeDBiP75770.

Enzyme and pathway databases

BioCyciEcoCyc:G6405-MONOMER.
ECOL316407:JW0771-MONOMER.

Miscellaneous databases

PROiP75770.

Family and domain databases

InterProiIPR022791. L-PG_synthase/AglD.
[Graphical view]
PfamiPF03706. LPG_synthase_TM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYBHN_ECOLI
AccessioniPrimary (citable) accession number: P75770
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.