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Protein

Uncharacterized protein YbhM

Gene

ybhM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6404-MONOMER.
ECOL316407:JW0770-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbhM
Gene namesi
Name:ybhM
Ordered Locus Names:b0787, JW0770
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13669. ybhM.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei19 – 3921HelicalSequence analysisAdd
BLAST
Transmembranei51 – 7121HelicalSequence analysisAdd
BLAST
Transmembranei81 – 10121HelicalSequence analysisAdd
BLAST
Transmembranei106 – 12621HelicalSequence analysisAdd
BLAST
Transmembranei136 – 15621HelicalSequence analysisAdd
BLAST
Transmembranei159 – 17921HelicalSequence analysisAdd
BLAST
Transmembranei209 – 22921HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 237237Uncharacterized protein YbhMPRO_0000168714Add
BLAST

Proteomic databases

PaxDbiP75769.
PRIDEiP75769.

Interactioni

Protein-protein interaction databases

BioGridi4262179. 20 interactions.
DIPiDIP-11416N.
STRINGi511145.b0787.

Structurei

3D structure databases

ProteinModelPortaliP75769.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410733J. Bacteria.
COG0670. LUCA.
HOGENOMiHOG000118068.
InParanoidiP75769.
KOiK06890.
OMAiFTINAFL.
OrthoDBiEOG6M9DVT.

Sequencei

Sequence statusi: Complete.

P75769-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MESYSQNSNK LDFQHEARIL NGIWLITALG LVATAGLAWG AKYIEITATK
60 70 80 90 100
YDSPPMYVAI GLLLLCMYGL SKDINKINAA IAGVIYLFLL SLVAIVVASL
110 120 130 140 150
VPVYAIIIVF STAGAMFLIS MLAGLLFNVD PGSHRFIIMM TLTGLALVII
160 170 180 190 200
VNAALMSERP IWIISCLMIV LWSGIISHGR NKLLELAGKC HSEELWSPVR
210 220 230
CAFTGALTLY YYFIGFFGIL AAIAITLVWQ RHTRFFH
Length:237
Mass (Da):26,123
Last modified:February 1, 1997 - v1
Checksum:i437F86C9E18B2DE2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73874.1.
AP009048 Genomic DNA. Translation: BAA35446.1.
PIRiC64815.
RefSeqiNP_415308.1. NC_000913.3.
WP_000446911.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73874; AAC73874; b0787.
BAA35446; BAA35446; BAA35446.
GeneIDi949001.
KEGGiecj:JW0770.
eco:b0787.
PATRICi32116775. VBIEscCol129921_0813.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73874.1.
AP009048 Genomic DNA. Translation: BAA35446.1.
PIRiC64815.
RefSeqiNP_415308.1. NC_000913.3.
WP_000446911.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP75769.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262179. 20 interactions.
DIPiDIP-11416N.
STRINGi511145.b0787.

Proteomic databases

PaxDbiP75769.
PRIDEiP75769.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73874; AAC73874; b0787.
BAA35446; BAA35446; BAA35446.
GeneIDi949001.
KEGGiecj:JW0770.
eco:b0787.
PATRICi32116775. VBIEscCol129921_0813.

Organism-specific databases

EchoBASEiEB3433.
EcoGeneiEG13669. ybhM.

Phylogenomic databases

eggNOGiENOG410733J. Bacteria.
COG0670. LUCA.
HOGENOMiHOG000118068.
InParanoidiP75769.
KOiK06890.
OMAiFTINAFL.
OrthoDBiEOG6M9DVT.

Enzyme and pathway databases

BioCyciEcoCyc:G6404-MONOMER.
ECOL316407:JW0770-MONOMER.

Miscellaneous databases

PROiP75769.

Family and domain databases

ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYBHM_ECOLI
AccessioniPrimary (citable) accession number: P75769
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: May 11, 2016
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.