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Reviewed, UniProtKB/Swiss-Prot P75747 (ABRB_ECOLI)

Last modified November 24, 2009. Version 65. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Protein abrB
Alternative name(s):
    AidB regulator
Gene names
Name: abrB
Synonyms: ybgN
Ordered Locus Names: b0715, JW5097
ORF Names: ECK0704
OrganismEscherichia coli (strain K12) [Complete proteome] [HAMAP]
Taxonomic identifier83333 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length348 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

General annotation (Comments)

Function

Seems to be involved in the regulation of aidB. Ref.4

Subcellular location

Cell inner membrane; Multi-pass membrane protein.

Sequence similarities

Belongs to the abrB family.

Ontologies

Keywords
   Cellular componentCell inner membrane
Cell membrane
Membrane
   DomainTransmembrane
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular componentintegral to membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

plasma membrane

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 348348Protein abrB
PRO_0000064432

Regions

Transmembrane20 – 4021 Potential
Transmembrane59 – 7921 Potential
Transmembrane83 – 10321 Potential
Transmembrane138 – 15821 Potential
Transmembrane173 – 19321 Potential
Transmembrane196 – 21621 Potential
Transmembrane221 – 24121 Potential
Transmembrane259 – 27921 Potential
Transmembrane288 – 30821 Potential
Transmembrane315 – 33521 Potential

Sequences

Sequence LengthMass (Da)Tools
P75747-1 [UniParc].

Last modified December 1, 2000. Version 2.
Checksum: 9A667EA6321B0B8A

FASTA34836,884
        10         20         30         40         50         60 
MPVLQWGMLC VLSLLLSIGF LAVHLPAALL LGPMIAGIIF SMRGITLQLP RSAFLAAQAI 

        70         80         90        100        110        120 
LGCMIAQNLT GSILTTLAVN WPIVLAILLV TLLSSAIVGW LLVRYSSLPG NTGAWGSSPG 

       130        140        150        160        170        180 
GAAAMVAMAQ DYGADIRLVA FMQYLRVLFV AGAAVLVTRM MLGDNAEAVN QHIVWFPPVS 

       190        200        210        220        230        240 
INLLLTILLA VVAGTVGCLL RLPSGTMLIP MLAGAVLQSG QLITIELPEW LLAMAYMAIG 

       250        260        270        280        290        300 
WRIGLGFDKQ ILLRALRPLP QILLSIFALL AICAGMAWGL TRFMHIDFMT AYLATSPGGL 

       310        320        330        340 
DTVAVIAAGS NADMALIMAM QTLRLFSILL TGPAIARFIS TYAPKRSA 

« Hide

References

« Hide 'large scale' references
[1]"A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map."
Oshima T., Aiba H., Baba T., Fujita K., Hayashi K., Honjo A., Ikemoto K., Inada T., Itoh T., Kajihara M., Kanai K., Kashimoto K., Kimura S., Kitagawa M., Makino K., Masuda S., Miki T., Mizobuchi K. expand/collapse author list , Mori H., Motomura K., Nakamura Y., Nashimoto H., Nishio Y., Saito N., Sampei G., Seki Y., Tagami H., Takemoto K., Wada C., Yamamoto Y., Yano M., Horiuchi T.
DNA Res. 3:137-155(1996) [PubMed: 8905232] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[2]"The complete genome sequence of Escherichia coli K-12."
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y.
Science 277:1453-1474(1997) [PubMed: 9278503] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[3]"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
Mol. Syst. Biol. 2:E1-E5(2006) [PubMed: 16738553] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[4]"Induction of the Escherichia coli aidB gene under oxygen-limiting conditions requires a functional rpoS (katF) gene."
Volkert M.R., Hajec L.I., Matijasevic Z., Fang F.C., Prince R.
J. Bacteriol. 176:7638-7645(1994) [PubMed: 8002588] [Abstract]
Cited for: POSSIBLE FUNCTION.
[5]"Global topology analysis of the Escherichia coli inner membrane proteome."
Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
Science 308:1321-1323(2005) [PubMed: 15919996] [Abstract]
Cited for: SUBCELLULAR LOCATION.
Strain: K12 / MG1655 / ATCC 47076.

Cross-references

Sequence databases

U00096 Genomic DNA. Translation: AAC73809.1.
AP009048 Genomic DNA. Translation: BAA35379.1.
PIRB64807.
RefSeqAP_001353.1.
NP_415243.4.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGP75747.

Genome annotation databases

GeneID945321.
GenomeReviewsGene locus JW5097 in contig AP009048_GR.
Gene locus b0715 in contig U00096_GR.
KEGGecj:JW5097.
eco:b0715.

Organism-specific databases

EchoBASEEB3094.
EcoGeneEG13310. abrB.
CMRSearch...

Phylogenomic databases

HOGENOMP75747.
OMAPGGASAM

Enzyme and pathway databases

BioCycEcoCyc:G6384-MON.
ECOL168927:B0715-MON.

Gene expression databases

GenevestigatorP75747.

Family and domain databases

InterProIPR017516. AbrB_dup.
IPR007820. Put_NH3_mOase.
[Graphical view]
PfamPF05145. AmoA. 1 hit.
[Graphical view]
TIGRFAMsTIGR03082. Gneg_AbrB_dup. 2 hits.
ProtoNetSearch...

Entry information

Entry nameABRB_ECOLI
AccessionPrimary (citable) accession number: P75747
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: December 1, 2000
Last modified: November 24, 2009
This is version 65 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents