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Protein

UPF0271 protein YbgL

Gene

ybgL

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G6382-MONOMER.
ECOL316407:JW0703-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0271 protein YbgL
Gene namesi
Name:ybgL
Ordered Locus Names:b0713, JW0703
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13308. ybgL.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001850071 – 244UPF0271 protein YbgLAdd BLAST244

Proteomic databases

PaxDbiP75746.
PRIDEiP75746.

Interactioni

Protein-protein interaction databases

BioGridi4259933. 99 interactors.
DIPiDIP-11398N.
IntActiP75746. 4 interactors.
STRINGi511145.b0713.

Structurei

Secondary structure

1244
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi3 – 12Combined sources10
Helixi16 – 22Combined sources7
Beta strandi24 – 29Combined sources6
Beta strandi31 – 34Combined sources4
Helixi37 – 50Combined sources14
Beta strandi53 – 57Combined sources5
Helixi75 – 95Combined sources21
Beta strandi100 – 103Combined sources4
Helixi107 – 113Combined sources7
Helixi117 – 130Combined sources14
Beta strandi135 – 139Combined sources5
Helixi143 – 150Combined sources8
Beta strandi155 – 159Combined sources5
Beta strandi169 – 171Combined sources3
Turni174 – 176Combined sources3
Helixi187 – 197Combined sources11
Beta strandi198 – 201Combined sources4
Beta strandi207 – 209Combined sources3
Beta strandi214 – 216Combined sources3
Helixi225 – 234Combined sources10

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1XW8X-ray2.00A1-244[»]
ProteinModelPortaliP75746.
SMRiP75746.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP75746.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0271 (lamB) family.Curated

Phylogenomic databases

eggNOGiENOG4105E7W. Bacteria.
COG1540. LUCA.
HOGENOMiHOG000237330.
InParanoidiP75746.
KOiK07160.
OMAiAQVGYRD.
PhylomeDBiP75746.

Family and domain databases

HAMAPiMF_00691. UPF0271. 1 hit.
InterProiIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR005501. UPF0271_LamB_YcsF.
[Graphical view]
PfamiPF03746. LamB_YcsF. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.

Sequencei

Sequence statusi: Complete.

P75746-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKIDLNADLG EGCASDAELL TLVSSANIAC GFHAGDAQIM QACVREAIKN
60 70 80 90 100
GVAIGAHPSF PDRENFGRSA MQLPPETVYA QTLYQIGALA TIARAQGGVM
110 120 130 140 150
RHVKPHGMLY NQAAKEAQLA DAIARAVYAC DPALILVGLA GSELIRAGKQ
160 170 180 190 200
YGLTTREEVF ADRGYQADGS LVPRSQSGAL IENEEQALAQ TLEMVQHGRV
210 220 230 240
KSITGEWATV AAQTVCLHGD GEHALAFARR LRSAFAEKGI VVAA
Length:244
Mass (Da):25,800
Last modified:February 1, 1997 - v1
Checksum:iDBC0FD14ADA0EB0A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73807.1.
AP009048 Genomic DNA. Translation: BAA35377.1.
PIRiH64806.
RefSeqiNP_415241.1. NC_000913.3.
WP_000687112.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73807; AAC73807; b0713.
BAA35377; BAA35377; BAA35377.
GeneIDi945318.
KEGGiecj:JW0703.
eco:b0713.
PATRICi32116621. VBIEscCol129921_0743.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73807.1.
AP009048 Genomic DNA. Translation: BAA35377.1.
PIRiH64806.
RefSeqiNP_415241.1. NC_000913.3.
WP_000687112.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1XW8X-ray2.00A1-244[»]
ProteinModelPortaliP75746.
SMRiP75746.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259933. 99 interactors.
DIPiDIP-11398N.
IntActiP75746. 4 interactors.
STRINGi511145.b0713.

Proteomic databases

PaxDbiP75746.
PRIDEiP75746.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73807; AAC73807; b0713.
BAA35377; BAA35377; BAA35377.
GeneIDi945318.
KEGGiecj:JW0703.
eco:b0713.
PATRICi32116621. VBIEscCol129921_0743.

Organism-specific databases

EchoBASEiEB3092.
EcoGeneiEG13308. ybgL.

Phylogenomic databases

eggNOGiENOG4105E7W. Bacteria.
COG1540. LUCA.
HOGENOMiHOG000237330.
InParanoidiP75746.
KOiK07160.
OMAiAQVGYRD.
PhylomeDBiP75746.

Enzyme and pathway databases

BioCyciEcoCyc:G6382-MONOMER.
ECOL316407:JW0703-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP75746.
PROiP75746.

Family and domain databases

HAMAPiMF_00691. UPF0271. 1 hit.
InterProiIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR005501. UPF0271_LamB_YcsF.
[Graphical view]
PfamiPF03746. LamB_YcsF. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYBGL_ECOLI
AccessioniPrimary (citable) accession number: P75746
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 110 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families
  4. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.