Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized protein YbgK

Gene

ybgK

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6381-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbgK
Gene namesi
Name:ybgK
Ordered Locus Names:b0712, JW0702
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13307. ybgK.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001687091 – 310Uncharacterized protein YbgKAdd BLAST310

Proteomic databases

PaxDbiP75745.
PRIDEiP75745.

Interactioni

Protein-protein interaction databases

BioGridi4259922. 240 interactors.
DIPiDIP-11397N.
IntActiP75745. 6 interactors.
STRINGi511145.b0712.

Structurei

Secondary structure

1310
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi2 – 5Combined sources4
Beta strandi12 – 14Combined sources3
Helixi22 – 24Combined sources3
Helixi34 – 44Combined sources11
Beta strandi52 – 57Combined sources6
Beta strandi60 – 64Combined sources5
Beta strandi68 – 75Combined sources8
Beta strandi88 – 90Combined sources3
Beta strandi92 – 94Combined sources3
Beta strandi99 – 102Combined sources4
Beta strandi109 – 115Combined sources7
Turni132 – 135Combined sources4
Turni138 – 141Combined sources4
Beta strandi172 – 178Combined sources7
Helixi182 – 184Combined sources3
Helixi187 – 195Combined sources9
Beta strandi198 – 200Combined sources3
Beta strandi206 – 213Combined sources8
Beta strandi233 – 235Combined sources3
Beta strandi243 – 245Combined sources3
Beta strandi251 – 253Combined sources3
Beta strandi257 – 261Combined sources5
Turni263 – 265Combined sources3
Helixi266 – 271Combined sources6
Beta strandi276 – 282Combined sources7
Helixi285 – 302Combined sources18

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5DUDX-ray2.80A/C1-310[»]
ProteinModelPortaliP75745.
SMRiP75745.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To H.influenzae HI_1730.Curated
To B.subtilis YcsJ and yeast urea amidolyase (DUR1,2).Curated

Phylogenomic databases

eggNOGiENOG4107R7A. Bacteria.
COG1984. LUCA.
HOGENOMiHOG000236167.
InParanoidiP75745.
OMAiQDLGRSH.
PhylomeDBiP75745.

Family and domain databases

InterProiView protein in InterPro
IPR003778. CT_A_B.
IPR029000. Cyclophilin-like_dom.
PfamiView protein in Pfam
PF02626. CT_A_B. 1 hit.
SMARTiView protein in SMART
SM00797. AHS2. 1 hit.
SUPFAMiSSF50891. SSF50891. 1 hit.
TIGRFAMsiTIGR00724. urea_amlyse_rel. 1 hit.

Sequencei

Sequence statusi: Complete.

P75745-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLKIIRAGMY TTVQDGGRHG FRQSGISHCG ALDMPALRIA NLLVGNDANA
60 70 80 90 100
PALEITLGQL TVEFETDGWF ALTGAGCEAR LDDNAVWTGW RLPMKAGQRL
110 120 130 140 150
TLKRPQHGMR SYLAVAGGID VPPVMGSCST DLKVGIGGLE GRLLKDGDRL
160 170 180 190 200
PIGKSKRDSM EAQGVKQLLW GNRIRALPGP EYHEFDRASQ DAFWRSPWQL
210 220 230 240 250
SSQSNRMGYR LQGQILKRTT DRELLSHGLL PGVVQVPHNG QPIVLMNDAQ
260 270 280 290 300
TTGGYPRIAC IIEADMYHLA QIPLGQPIHF VQCSLEEALK ARQDQQRYFE
310
QLAWRLHNEN
Length:310
Mass (Da):34,386
Last modified:February 1, 1997 - v1
Checksum:i998FDFEB23602C25
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73806.1.
AP009048 Genomic DNA. Translation: BAA35376.1.
PIRiG64806.
RefSeqiNP_415240.1. NC_000913.3.
WP_000912724.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73806; AAC73806; b0712.
BAA35376; BAA35376; BAA35376.
GeneIDi945317.
KEGGiecj:JW0702.
eco:b0712.
PATRICi32116619. VBIEscCol129921_0742.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73806.1.
AP009048 Genomic DNA. Translation: BAA35376.1.
PIRiG64806.
RefSeqiNP_415240.1. NC_000913.3.
WP_000912724.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5DUDX-ray2.80A/C1-310[»]
ProteinModelPortaliP75745.
SMRiP75745.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259922. 240 interactors.
DIPiDIP-11397N.
IntActiP75745. 6 interactors.
STRINGi511145.b0712.

Proteomic databases

PaxDbiP75745.
PRIDEiP75745.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73806; AAC73806; b0712.
BAA35376; BAA35376; BAA35376.
GeneIDi945317.
KEGGiecj:JW0702.
eco:b0712.
PATRICi32116619. VBIEscCol129921_0742.

Organism-specific databases

EchoBASEiEB3091.
EcoGeneiEG13307. ybgK.

Phylogenomic databases

eggNOGiENOG4107R7A. Bacteria.
COG1984. LUCA.
HOGENOMiHOG000236167.
InParanoidiP75745.
OMAiQDLGRSH.
PhylomeDBiP75745.

Enzyme and pathway databases

BioCyciEcoCyc:G6381-MONOMER.

Miscellaneous databases

PROiPR:P75745.

Family and domain databases

InterProiView protein in InterPro
IPR003778. CT_A_B.
IPR029000. Cyclophilin-like_dom.
PfamiView protein in Pfam
PF02626. CT_A_B. 1 hit.
SMARTiView protein in SMART
SM00797. AHS2. 1 hit.
SUPFAMiSSF50891. SSF50891. 1 hit.
TIGRFAMsiTIGR00724. urea_amlyse_rel. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYBGK_ECOLI
AccessioniPrimary (citable) accession number: P75745
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: April 12, 2017
This is version 110 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.