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Protein

Uncharacterized protein YbgK

Gene

ybgK

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6381-MONOMER
MetaCyc:G6381-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbgK
Gene namesi
Name:ybgK
Ordered Locus Names:b0712, JW0702
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13307 ybgK

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001687091 – 310Uncharacterized protein YbgKAdd BLAST310

Proteomic databases

PaxDbiP75745
PRIDEiP75745

Interactioni

Protein-protein interaction databases

BioGridi4259922, 246 interactors
DIPiDIP-11397N
IntActiP75745, 7 interactors
STRINGi316385.ECDH10B_0779

Structurei

Secondary structure

1310
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi2 – 5Combined sources4
Beta strandi12 – 14Combined sources3
Helixi22 – 24Combined sources3
Helixi34 – 44Combined sources11
Beta strandi52 – 57Combined sources6
Beta strandi60 – 64Combined sources5
Beta strandi68 – 75Combined sources8
Beta strandi88 – 90Combined sources3
Beta strandi92 – 94Combined sources3
Beta strandi99 – 102Combined sources4
Beta strandi109 – 115Combined sources7
Turni132 – 135Combined sources4
Turni138 – 141Combined sources4
Beta strandi172 – 178Combined sources7
Helixi182 – 184Combined sources3
Helixi187 – 195Combined sources9
Beta strandi198 – 200Combined sources3
Beta strandi206 – 213Combined sources8
Beta strandi233 – 235Combined sources3
Beta strandi243 – 245Combined sources3
Beta strandi251 – 253Combined sources3
Beta strandi257 – 261Combined sources5
Turni263 – 265Combined sources3
Helixi266 – 271Combined sources6
Beta strandi276 – 282Combined sources7
Helixi285 – 302Combined sources18

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5DUDX-ray2.80A/C1-310[»]
ProteinModelPortaliP75745
SMRiP75745
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To H.influenzae HI_1730.Curated
To B.subtilis YcsJ and yeast urea amidolyase (DUR1,2).Curated

Phylogenomic databases

eggNOGiENOG4107R7A Bacteria
COG1984 LUCA
HOGENOMiHOG000236167
InParanoidiP75745
OMAiQDLGRSH
PhylomeDBiP75745

Family and domain databases

Gene3Di2.40.100.10, 1 hit
InterProiView protein in InterPro
IPR003778 CT_A_B
IPR029000 Cyclophilin-like_dom_sf
PfamiView protein in Pfam
PF02626 CT_A_B, 1 hit
SMARTiView protein in SMART
SM00797 AHS2, 1 hit
SUPFAMiSSF50891 SSF50891, 1 hit
TIGRFAMsiTIGR00724 urea_amlyse_rel, 1 hit

Sequencei

Sequence statusi: Complete.

P75745-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLKIIRAGMY TTVQDGGRHG FRQSGISHCG ALDMPALRIA NLLVGNDANA
60 70 80 90 100
PALEITLGQL TVEFETDGWF ALTGAGCEAR LDDNAVWTGW RLPMKAGQRL
110 120 130 140 150
TLKRPQHGMR SYLAVAGGID VPPVMGSCST DLKVGIGGLE GRLLKDGDRL
160 170 180 190 200
PIGKSKRDSM EAQGVKQLLW GNRIRALPGP EYHEFDRASQ DAFWRSPWQL
210 220 230 240 250
SSQSNRMGYR LQGQILKRTT DRELLSHGLL PGVVQVPHNG QPIVLMNDAQ
260 270 280 290 300
TTGGYPRIAC IIEADMYHLA QIPLGQPIHF VQCSLEEALK ARQDQQRYFE
310
QLAWRLHNEN
Length:310
Mass (Da):34,386
Last modified:February 1, 1997 - v1
Checksum:i998FDFEB23602C25
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC73806.1
AP009048 Genomic DNA Translation: BAA35376.1
PIRiG64806
RefSeqiNP_415240.1, NC_000913.3
WP_000912724.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC73806; AAC73806; b0712
BAA35376; BAA35376; BAA35376
GeneIDi945317
KEGGiecj:JW0702
eco:b0712
PATRICifig|1411691.4.peg.1561

Similar proteinsi

Entry informationi

Entry nameiYBGK_ECOLI
AccessioniPrimary (citable) accession number: P75745
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: March 28, 2018
This is version 116 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
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