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Protein

Putative protein YbfL

Gene

ybfL

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein uncertaini

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G6377-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative protein YbfL
Alternative name(s):
H repeat-associated protein in rhsC-phrB intergenic region
ORF-H2
Gene namesi
Name:ybfL
Ordered Locus Names:b0705, JW0695
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13417. ybfL.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001686961 – 378Putative protein YbfLAdd BLAST378

Proteomic databases

PaxDbiP75741.
PRIDEiP75741.

Interactioni

Protein-protein interaction databases

IntActiP75741. 7 interactors.
STRINGi511145.b3484.

Structurei

3D structure databases

ProteinModelPortaliP75741.
SMRiP75741.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the transposase 11 family.Curated

Phylogenomic databases

eggNOGiENOG410600T. Bacteria.
COG5433. LUCA.
HOGENOMiHOG000042098.
InParanoidiP75741.
OMAiNIIMVES.

Family and domain databases

InterProiIPR002559. Transposase_11.
IPR032806. YbfD_N.
[Graphical view]
PfamiPF01609. DDE_Tnp_1. 1 hit.
PF13808. DDE_Tnp_1_assoc. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P75741-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MELKKLMEHI SIIPDYRQAW KVEHKLSGIL LLTIFAVISG AESWEDIEDF
60 70 80 90 100
GETHLDFLKQ YGDFENGIPV HDTIARVVSC ISPAKFHECF INWMRDCHSS
110 120 130 140 150
NDKDVIAIDG KTLRHSYDKS RRRGAIHVIS AFSTMHSLVI GQIKTDKKSN
160 170 180 190 200
EITAIPELLN MLDIKGKIIT TDAMGCQKDI AEKIQKQGGD YLFAVKGNQG
210 220 230 240 250
RLNKAFEEKF PLKELNNPEH DSYAMSEKSH GREEIRLHIV CDVPDELIDF
260 270 280 290 300
TFEWKGLKKL CVAVSFRSII AEQKKEPEMT VRYYISSADL TAEKFATAIR
310 320 330 340 350
NHWHVENKLH WRLDVVMNED DCKIRRGNAA ELFSGIRHIA INILTNDKVF
360 370
KAGLRRKMRK AAMDRNYLAS VLAGSGLS
Length:378
Mass (Da):43,161
Last modified:December 12, 2006 - v3
Checksum:i6F3BD9B0460EA69C
GO

Sequence cautioni

The sequence AAC63075 differs from that shown. Reason: Erroneous termination at position 18. Translated as Gln.Curated
The sequence AP009048 differs from that shown. Reason: Erroneous termination at position 18. Translated as Gln.Curated
The sequence U00096 differs from that shown. Reason: Erroneous termination at position 18. Translated as Gln.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L02373 Genomic DNA. Translation: AAC63075.1. Sequence problems.
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. No translation available.
PIRiH64805.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L02373 Genomic DNA. Translation: AAC63075.1. Sequence problems.
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. No translation available.
PIRiH64805.

3D structure databases

ProteinModelPortaliP75741.
SMRiP75741.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP75741. 7 interactors.
STRINGi511145.b3484.

Proteomic databases

PaxDbiP75741.
PRIDEiP75741.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

EchoBASEiEB3193.
EcoGeneiEG13417. ybfL.

Phylogenomic databases

eggNOGiENOG410600T. Bacteria.
COG5433. LUCA.
HOGENOMiHOG000042098.
InParanoidiP75741.
OMAiNIIMVES.

Enzyme and pathway databases

BioCyciEcoCyc:G6377-MONOMER.

Family and domain databases

InterProiIPR002559. Transposase_11.
IPR032806. YbfD_N.
[Graphical view]
PfamiPF01609. DDE_Tnp_1. 1 hit.
PF13808. DDE_Tnp_1_assoc. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYBFL_ECOLI
AccessioniPrimary (citable) accession number: P75741
Secondary accession number(s): Q9R7S9, Q9R7T0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: December 12, 2006
Last modified: November 2, 2016
This is version 93 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.