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Protein

Putative uncharacterized protein ExoD

Gene

exoD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein uncertaini

Functioni

GO - Molecular functioni

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G6295-MONOMER.
ECOL316407:JW0526-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative uncharacterized protein ExoD
Gene namesi
Name:exoD
Synonyms:ybcC
Ordered Locus Names:b0539, JW0526
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12349. exoD.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 8787Putative uncharacterized protein ExoDPRO_0000268621Add
BLAST

Interactioni

Protein-protein interaction databases

BioGridi4261070. 6 interactions.
STRINGi316407.85674674.

Structurei

3D structure databases

ProteinModelPortaliP75717.
SMRiP75717. Positions 1-87.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To Bacteriophage lambda exonuclease exo.Curated

Family and domain databases

Gene3Di3.90.320.10. 1 hit.
InterProiIPR011604. Exonuc_phg/RecB_C.
IPR011335. Restrct_endonuc-II-like.
[Graphical view]
SUPFAMiSSF52980. SSF52980. 1 hit.

Sequencei

Sequence statusi: Complete.

P75717-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKFRLGGFEA IKSAYMAQVQ YSMWVTRKDA WYFANYDPRM KREGLHYVVI
60 70 80
ERNEKYMASF DEMVPEFIEK MDEALAEIGF VFGEQWR
Length:87
Mass (Da):10,509
Last modified:February 1, 1997 - v1
Checksum:i91722893B96A2491
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAE76314.1.
PIRiA64786.
RefSeqiWP_000672150.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiBAE76314; BAE76314; BAE76314.
KEGGiecj:JW0526.
PATRICi48660286. VBIEscCol107702_0535.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAE76314.1.
PIRiA64786.
RefSeqiWP_000672150.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP75717.
SMRiP75717. Positions 1-87.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261070. 6 interactions.
STRINGi316407.85674674.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAE76314; BAE76314; BAE76314.
KEGGiecj:JW0526.
PATRICi48660286. VBIEscCol107702_0535.

Organism-specific databases

EcoGeneiEG12349. exoD.

Enzyme and pathway databases

BioCyciEcoCyc:G6295-MONOMER.
ECOL316407:JW0526-MONOMER.

Family and domain databases

Gene3Di3.90.320.10. 1 hit.
InterProiIPR011604. Exonuc_phg/RecB_C.
IPR011335. Restrct_endonuc-II-like.
[Graphical view]
SUPFAMiSSF52980. SSF52980. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiEXOD_ECOLI
AccessioniPrimary (citable) accession number: P75717
Secondary accession number(s): Q2MBP2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 12, 2006
Last sequence update: February 1, 1997
Last modified: January 20, 2016
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Miscellaneous

Encoded by the cryptic lambdoid prophage DLP12.

Caution

Could be the product of a pseudogene.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.