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Protein

UPF0401 protein YkfF

Gene

ykfF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6124-MONOMER.
ECOL316407:JW5023-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0401 protein YkfF
Gene namesi
Name:ykfF
Ordered Locus Names:b0249, JW5023
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14283. ykfF.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7979UPF0401 protein YkfFPRO_0000168549Add
BLAST

Proteomic databases

PaxDbiP75677.

Interactioni

Protein-protein interaction databases

BioGridi4263097. 3 interactions.
STRINGi511145.b0249.

Structurei

Secondary structure

1
79
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi14 – 2310Combined sources
Beta strandi27 – 315Combined sources
Beta strandi33 – 353Combined sources
Beta strandi38 – 425Combined sources
Beta strandi48 – 569Combined sources
Helixi59 – 679Combined sources
Turni68 – 747Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2HJJNMR-A1-79[»]
ProteinModelPortaliP75677.
SMRiP75677. Positions 10-75.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP75677.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0401 family.Curated

Phylogenomic databases

eggNOGiENOG4106ZN7. Bacteria.
ENOG410YVYF. LUCA.
HOGENOMiHOG000266874.
OMAiYINIAIE.
PhylomeDBiP75677.

Family and domain databases

InterProiIPR009253. DUF905.
[Graphical view]
PfamiPF06006. DUF905. 1 hit.
[Graphical view]
ProDomiPD028015. DUF905_proteobac. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

P75677-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTQSVLLPPG PFTRRQAQAV TTTYSNITLE DDQGSHFRLV VRDTEGRMVW
60 70
RAWNFEPDAG EGLNRYIRTS GIRTDTATR
Length:79
Mass (Da):9,014
Last modified:February 1, 1997 - v1
Checksum:i614D5749721A234A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73352.1.
AP009048 Genomic DNA. Translation: BAA77918.2.
PIRiA64750.
RefSeqiNP_414783.1. NC_000913.3.
WP_000194654.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73352; AAC73352; b0249.
BAA77918; BAA77918; BAA77918.
GeneIDi948839.
KEGGiecj:JW5023.
eco:b0249.
PATRICi32115615. VBIEscCol129921_0251.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73352.1.
AP009048 Genomic DNA. Translation: BAA77918.2.
PIRiA64750.
RefSeqiNP_414783.1. NC_000913.3.
WP_000194654.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2HJJNMR-A1-79[»]
ProteinModelPortaliP75677.
SMRiP75677. Positions 10-75.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263097. 3 interactions.
STRINGi511145.b0249.

Proteomic databases

PaxDbiP75677.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73352; AAC73352; b0249.
BAA77918; BAA77918; BAA77918.
GeneIDi948839.
KEGGiecj:JW5023.
eco:b0249.
PATRICi32115615. VBIEscCol129921_0251.

Organism-specific databases

EchoBASEiEB4031.
EcoGeneiEG14283. ykfF.

Phylogenomic databases

eggNOGiENOG4106ZN7. Bacteria.
ENOG410YVYF. LUCA.
HOGENOMiHOG000266874.
OMAiYINIAIE.
PhylomeDBiP75677.

Enzyme and pathway databases

BioCyciEcoCyc:G6124-MONOMER.
ECOL316407:JW5023-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP75677.
PROiP75677.

Family and domain databases

InterProiIPR009253. DUF905.
[Graphical view]
PfamiPF06006. DUF905. 1 hit.
[Graphical view]
ProDomiPD028015. DUF905_proteobac. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Entry informationi

Entry nameiYKFF_ECOLI
AccessioniPrimary (citable) accession number: P75677
Secondary accession number(s): Q9R2D8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: September 7, 2016
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families
  4. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.