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Protein
Submitted name:

RNA polymerase sigma-37

Gene

rpoF

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
  3. sigma factor activity Source: UniProtKB-KW

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Sigma factorSAAS annotation

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase sigma-37Imported
Gene namesi
Name:rpoFImported
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)Imported
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

IntActiP74595. 3 interactions.
STRINGi1148.slr1564.

Structurei

3D structure databases

ProteinModelPortaliP74595.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1191.
HOGENOMiHOG000270270.
InParanoidiP74595.
KOiK03090.
OMAiRIIHMRF.
PhylomeDBiP74595.

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.

Sequencei

Sequence statusi: Complete.

P74595-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTNATSESLK LETLRLFKIY AESHDIGVRN RIMEVNLGLV RKEAHHWTAQ
60 70 80 90 100
CNESFEDLSQ VGCLGLIRAI ERFDVSKGNA FSSFAIPYVR GEIQHFLRDK
110 120 130 140 150
SNCVRIPRRW LDLGRQAIAV QQEFRLKYDR AATDEEIAQI LAVPLADWQE
160 170 180 190 200
TKLALQNREL VSLDTKVNGD DEGQVNLGDC LAHHEFRSFQ LSQEDQIRLQ
210 220 230 240 250
QALAGLEERT RRIVEFVFLH DFTHKEAAEM MGVSVITVSR RIKQGIGALK

KALNTEIF
Length:258
Mass (Da):29,523
Last modified:February 1, 1997 - v1
Checksum:i77D648140540BBEB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA18703.1.
PIRiS76791.
RefSeqiNP_442891.1. NC_000911.1.
YP_005652952.1. NC_017277.1.

Genome annotation databases

EnsemblBacteriaiBAA18703; BAA18703; BAA18703.
KEGGisyn:slr1564.
PATRICi23843584. VBISynSp132158_3322.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA18703.1.
PIRiS76791.
RefSeqiNP_442891.1. NC_000911.1.
YP_005652952.1. NC_017277.1.

3D structure databases

ProteinModelPortaliP74595.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP74595. 3 interactions.
STRINGi1148.slr1564.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA18703; BAA18703; BAA18703.
KEGGisyn:slr1564.
PATRICi23843584. VBISynSp132158_3322.

Phylogenomic databases

eggNOGiCOG1191.
HOGENOMiHOG000270270.
InParanoidiP74595.
KOiK03090.
OMAiRIIHMRF.
PhylomeDBiP74595.

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / KazusaImported.

Entry informationi

Entry nameiP74595_SYNY3
AccessioniPrimary (citable) accession number: P74595
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: April 1, 2015
This is version 110 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.