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Protein
Submitted name:

RNA polymerase sigma-37

Gene

rpoF

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingSAAS annotation, Sigma factorSAAS annotation
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase sigma-37Imported
Gene namesi
Name:rpoFImported
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)Imported
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaSynechococcalesMerismopediaceaeSynechocystis
Proteomesi
  • UP000001425 Componenti: Chromosome

PTM / Processingi

Proteomic databases

PaxDbiP74595
PRIDEiP74595

Interactioni

Protein-protein interaction databases

IntActiP74595, 3 interactors
STRINGi1148.SYNGTS_2999

Structurei

3D structure databases

ProteinModelPortaliP74595
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini35 – 101Sigma70_r2InterPro annotationAdd BLAST67
Domaini202 – 251Sigma70_r4InterPro annotationAdd BLAST50

Sequence similaritiesi

Belongs to the sigma-70 factor family. ECF subfamily.SAAS annotation

Phylogenomic databases

HOGENOMiHOG000270270
InParanoidiP74595
KOiK03090
OMAiRGEIQHY
PhylomeDBiP74595

Family and domain databases

Gene3Di1.10.10.10, 2 hits
InterProiView protein in InterPro
IPR014284 RNA_pol_sigma-70_dom
IPR007627 RNA_pol_sigma70_r2
IPR007630 RNA_pol_sigma70_r4
IPR013325 RNA_pol_sigma_r2
IPR013324 RNA_pol_sigma_r3/r4-like
IPR036388 WH-like_DNA-bd_sf
PfamiView protein in Pfam
PF04542 Sigma70_r2, 1 hit
PF04545 Sigma70_r4, 1 hit
SUPFAMiSSF88659 SSF88659, 2 hits
SSF88946 SSF88946, 1 hit
TIGRFAMsiTIGR02937 sigma70-ECF, 1 hit

Sequencei

Sequence statusi: Complete.

P74595-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTNATSESLK LETLRLFKIY AESHDIGVRN RIMEVNLGLV RKEAHHWTAQ
60 70 80 90 100
CNESFEDLSQ VGCLGLIRAI ERFDVSKGNA FSSFAIPYVR GEIQHFLRDK
110 120 130 140 150
SNCVRIPRRW LDLGRQAIAV QQEFRLKYDR AATDEEIAQI LAVPLADWQE
160 170 180 190 200
TKLALQNREL VSLDTKVNGD DEGQVNLGDC LAHHEFRSFQ LSQEDQIRLQ
210 220 230 240 250
QALAGLEERT RRIVEFVFLH DFTHKEAAEM MGVSVITVSR RIKQGIGALK

KALNTEIF
Length:258
Mass (Da):29,523
Last modified:February 1, 1997 - v1
Checksum:i77D648140540BBEB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA Translation: BAA18703.1
PIRiS76791

Genome annotation databases

EnsemblBacteriaiBAA18703; BAA18703; BAA18703
KEGGisyn:slr1564

Similar proteinsi

Entry informationi

Entry nameiP74595_SYNY3
AccessioniPrimary (citable) accession number: P74595
Entry historyiIntegrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: April 25, 2018
This is version 131 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health