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P74595

- P74595_SYNY3

UniProt

P74595 - P74595_SYNY3

Protein
Submitted name:

RNA polymerase sigma-37

Gene

rpoF

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 105 (01 Oct 2014)
      Sequence version 1 (01 Feb 1997)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW
    2. sequence-specific DNA binding transcription factor activity Source: InterPro
    3. sigma factor activity Source: UniProtKB-KW

    GO - Biological processi

    1. DNA-templated transcription, initiation Source: InterPro

    Keywords - Molecular functioni

    Sigma factorSAAS annotation

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-bindingSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    RNA polymerase sigma-37Imported
    Gene namesi
    Name:rpoFImported
    OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)Imported
    Taxonomic identifieri1111708 [NCBI]
    Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
    ProteomesiUP000001425: Chromosome

    Interactioni

    Protein-protein interaction databases

    IntActiP74595. 3 interactions.
    STRINGi1148.slr1564.

    Structurei

    3D structure databases

    ProteinModelPortaliP74595.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1191.
    HOGENOMiHOG000270270.
    KOiK03090.
    OMAiYRSFQLS.
    PhylomeDBiP74595.

    Family and domain databases

    Gene3Di1.10.10.10. 2 hits.
    InterProiIPR014284. RNA_pol_sigma-70_dom.
    IPR007627. RNA_pol_sigma70_r2.
    IPR007630. RNA_pol_sigma70_r4.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF04542. Sigma70_r2. 1 hit.
    PF04545. Sigma70_r4. 1 hit.
    [Graphical view]
    SUPFAMiSSF88659. SSF88659. 2 hits.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P74595-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTNATSESLK LETLRLFKIY AESHDIGVRN RIMEVNLGLV RKEAHHWTAQ    50
    CNESFEDLSQ VGCLGLIRAI ERFDVSKGNA FSSFAIPYVR GEIQHFLRDK 100
    SNCVRIPRRW LDLGRQAIAV QQEFRLKYDR AATDEEIAQI LAVPLADWQE 150
    TKLALQNREL VSLDTKVNGD DEGQVNLGDC LAHHEFRSFQ LSQEDQIRLQ 200
    QALAGLEERT RRIVEFVFLH DFTHKEAAEM MGVSVITVSR RIKQGIGALK 250
    KALNTEIF 258
    Length:258
    Mass (Da):29,523
    Last modified:February 1, 1997 - v1
    Checksum:i77D648140540BBEB
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000022 Genomic DNA. Translation: BAA18703.1.
    PIRiS76791.
    RefSeqiNP_442891.1. NC_000911.1.
    YP_005652952.1. NC_017277.1.

    Genome annotation databases

    EnsemblBacteriaiBAA18703; BAA18703; BAA18703.
    GeneIDi952275.
    KEGGisyn:slr1564.
    syy:SYNGTS_2999.
    PATRICi23843584. VBISynSp132158_3322.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000022 Genomic DNA. Translation: BAA18703.1 .
    PIRi S76791.
    RefSeqi NP_442891.1. NC_000911.1.
    YP_005652952.1. NC_017277.1.

    3D structure databases

    ProteinModelPortali P74595.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi P74595. 3 interactions.
    STRINGi 1148.slr1564.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAA18703 ; BAA18703 ; BAA18703 .
    GeneIDi 952275.
    KEGGi syn:slr1564.
    syy:SYNGTS_2999.
    PATRICi 23843584. VBISynSp132158_3322.

    Phylogenomic databases

    eggNOGi COG1191.
    HOGENOMi HOG000270270.
    KOi K03090.
    OMAi YRSFQLS.
    PhylomeDBi P74595.

    Family and domain databases

    Gene3Di 1.10.10.10. 2 hits.
    InterProi IPR014284. RNA_pol_sigma-70_dom.
    IPR007627. RNA_pol_sigma70_r2.
    IPR007630. RNA_pol_sigma70_r4.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF04542. Sigma70_r2. 1 hit.
    PF04545. Sigma70_r4. 1 hit.
    [Graphical view ]
    SUPFAMi SSF88659. SSF88659. 2 hits.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsi TIGR02937. sigma70-ECF. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
      Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
      , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
      DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PCC 6803 / KazusaImported.

    Entry informationi

    Entry nameiP74595_SYNY3
    AccessioniPrimary (citable) accession number: P74595
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 1, 1997
    Last sequence update: February 1, 1997
    Last modified: October 1, 2014
    This is version 105 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3