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Protein

Thylakoid membrane protein slr1949

Gene

slr1949

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Recommended name:
Thylakoid membrane protein slr1949
Gene namesi
Ordered Locus Names:slr1949
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425 Componenti: Chromosome

Subcellular locationi

Cellular thylakoid membrane 1 Publication; Single-pass membrane protein 1 Publication

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei109 – 13123HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. thylakoid membrane Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Membrane, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 212212Thylakoid membrane protein slr1949PRO_0000352743Add
BLAST

Proteomic databases

PaxDbiP74511.

Interactioni

Protein-protein interaction databases

STRINGi1148.slr1949.

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili180 – 21233Sequence AnalysisAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi114 – 1229Poly-Leu

Keywords - Domaini

Coiled coil, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiNOG84194.
OMAiQSWVFVE.
OrthoDBiEOG6GFGKD.

Family and domain databases

InterProiIPR021751. DUF3318.
[Graphical view]
PfamiPF11780. DUF3318. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P74511-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTSYSSATAR AEMSELRRLK SLLPPELQSW VMVEGSTEVN PPLIRSEELG
60 70 80 90 100
RDEIEIQVDL AKWENLAIDQ RNLLFWHEVA RIQSDTIPRE GWEMAALAIG
110 120 130 140 150
LGGAVGELWV QDGLLLLLAL GLCGISGYRL WQKNNGEKRI KEAIEADEKA
160 170 180 190 200
ITLATRFGYT LPNAYKSLGS AFKTLIEQTP NRRQRKQYET RLQALRQSAA
210
KMKAKTQKAK AL
Length:212
Mass (Da):23,883
Last modified:February 1, 1997 - v1
Checksum:i777F6D5786B83623
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA18615.1.
PIRiS76486.
RefSeqiNP_441937.1. NC_000911.1.
YP_005651997.1. NC_017277.1.
YP_007451817.1. NC_020286.1.

Genome annotation databases

EnsemblBacteriaiBAA18615; BAA18615; BAA18615.
KEGGisyn:slr1949.
PATRICi23841422. VBISynSp132158_2260.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA18615.1.
PIRiS76486.
RefSeqiNP_441937.1. NC_000911.1.
YP_005651997.1. NC_017277.1.
YP_007451817.1. NC_020286.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi1148.slr1949.

Proteomic databases

PaxDbiP74511.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA18615; BAA18615; BAA18615.
KEGGisyn:slr1949.
PATRICi23841422. VBISynSp132158_2260.

Phylogenomic databases

eggNOGiNOG84194.
OMAiQSWVFVE.
OrthoDBiEOG6GFGKD.

Family and domain databases

InterProiIPR021751. DUF3318.
[Graphical view]
PfamiPF11780. DUF3318. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / Kazusa.
  2. "Proteomic studies of the thylakoid membrane of Synechocystis sp. PCC 6803."
    Srivastava R., Pisareva T., Norling B.
    Proteomics 5:4905-4916(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION IN THYLAKOID.

Entry informationi

Entry nameiY1949_SYNY3
AccessioniPrimary (citable) accession number: P74511
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 14, 2008
Last sequence update: February 1, 1997
Last modified: April 1, 2015
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.