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Protein

Protein Thf1

Gene

thf1

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

May be involved in photosynthetic membrane biogenesis.UniRule annotation

GO - Biological processi

  1. photosynthesis Source: InterPro
  2. thylakoid membrane organization Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Protein Thf1UniRule annotation
Gene namesi
Name:thf1UniRule annotation
Ordered Locus Names:sll1414
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. plasma membrane-derived thylakoid photosystem II Source: UniProtKB
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 240240Protein Thf1PRO_0000235226Add
BLAST

Proteomic databases

PaxDbiP73956.

Interactioni

Protein-protein interaction databases

IntActiP73956. 2 interactions.
STRINGi1148.sll1414.

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili186 – 22237UniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the THF1 family.UniRule annotation

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiNOG08111.
HOGENOMiHOG000232762.
InParanoidiP73956.
OMAiHTRPINS.
OrthoDBiEOG6PS5V5.
PhylomeDBiP73956.

Family and domain databases

HAMAPiMF_01843. Thf1.
InterProiIPR017499. PSII_Psb29.
[Graphical view]
PfamiPF11264. ThylakoidFormat. 1 hit.
[Graphical view]
TIGRFAMsiTIGR03060. PS_II_psb29. 1 hit.

Sequencei

Sequence statusi: Complete.

P73956-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTKIRTVSDA KRKFFTHYSR PISSIYRRFV EELLVEMHLL SVNIDFTYDP
60 70 80 90 100
IFALGIVTSF NSFMQGYQPA EQLPAIFNAL CHGVDQNPDQ VRQDAKNVAA
110 120 130 140 150
SAHHIGLDAW VTAAASEQAS GDNLLLNTLT GIHQRHKFKY SRLFAIGLYT
160 170 180 190 200
LLADQDPEVK DNDEKRQDYL TRLSELLDLS LDKVVKDLDL YRSNLEKVDQ
210 220 230 240
LLKVLEDAAE AERKKKEKQA ASTTPAIEEA PVTTAESSES
Length:240
Mass (Da):27,075
Last modified:February 1, 1997 - v1
Checksum:iFA9AF7C6598DDF20
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA18023.1.
PIRiS75462.
RefSeqiNP_441343.1. NC_000911.1.
YP_005651400.1. NC_017277.1.
YP_007451225.1. NC_020286.1.

Genome annotation databases

EnsemblBacteriaiBAA18023; BAA18023; BAA18023.
KEGGisyn:sll1414.
PATRICi23840060. VBISynSp132158_1590.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA18023.1.
PIRiS75462.
RefSeqiNP_441343.1. NC_000911.1.
YP_005651400.1. NC_017277.1.
YP_007451225.1. NC_020286.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP73956. 2 interactions.
STRINGi1148.sll1414.

Proteomic databases

PaxDbiP73956.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA18023; BAA18023; BAA18023.
KEGGisyn:sll1414.
PATRICi23840060. VBISynSp132158_1590.

Phylogenomic databases

eggNOGiNOG08111.
HOGENOMiHOG000232762.
InParanoidiP73956.
OMAiHTRPINS.
OrthoDBiEOG6PS5V5.
PhylomeDBiP73956.

Family and domain databases

HAMAPiMF_01843. Thf1.
InterProiIPR017499. PSII_Psb29.
[Graphical view]
PfamiPF11264. ThylakoidFormat. 1 hit.
[Graphical view]
TIGRFAMsiTIGR03060. PS_II_psb29. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / Kazusa.

Entry informationi

Entry nameiTHF1_SYNY3
AccessioniPrimary (citable) accession number: P73956
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 16, 2006
Last sequence update: February 1, 1997
Last modified: April 1, 2015
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.