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Protein

Group 1 truncated hemoglobin GlbN

Gene

glbN

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Forms a very stable complex with oxygen. The oxygen dissociation rate is 0.011 s(-1).

Cofactori

hemeNote: Binds 1 heme group per subunit.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi46Iron (heme distal ligand)1
Metal bindingi70Iron (heme proximal ligand)1
Binding sitei117Heme (covalent; via tele nitrogen)1

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

Oxygen transport, Transport

Keywords - Ligandi

Heme, Iron, Metal-binding

Enzyme and pathway databases

BioCyciMetaCyc:MONOMER-19373.

Names & Taxonomyi

Protein namesi
Recommended name:
Group 1 truncated hemoglobin GlbN
Short name:
Truncated Hb
Short name:
trHbN
Alternative name(s):
Cyanoglobin
Hemoglobin
Short name:
Hb
SynHb
Gene namesi
Name:glbN
Ordered Locus Names:slr2097
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaSynechococcalesMerismopediaceaeSynechocystis
Proteomesi
  • UP000001425 Componenti: Chromosome

Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Mutagenesisi46H → A: Changes iron coordination. 1 Publication1
Mutagenesisi117H → A: Increases heme dissociation from the Fe(2+) hexacoordinate complex. 1 Publication1

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001626461 – 124Group 1 truncated hemoglobin GlbNAdd BLAST124

Interactioni

Subunit structurei

Monomer.1 Publication

Structurei

Secondary structure

1124
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi4 – 8Combined sources5
Helixi10 – 26Combined sources17
Turni29 – 31Combined sources3
Helixi32 – 35Combined sources4
Helixi40 – 54Combined sources15
Beta strandi57 – 59Combined sources3
Helixi66 – 77Combined sources12
Helixi81 – 98Combined sources18
Helixi102 – 113Combined sources12
Helixi115 – 121Combined sources7

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1MWBNMR-A2-124[»]
1RTXX-ray1.80A2-124[»]
1S69X-ray1.68A1-124[»]
1S6AX-ray1.69A1-124[»]
2HZ1X-ray1.80A2-124[»]
2HZ2X-ray2.00A2-124[»]
2HZ3X-ray1.90A2-124[»]
ProteinModelPortaliP73925.
SMRiP73925.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP73925.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000262697.
InParanoidiP73925.
KOiK06886.
OMAiISHFFED.
PhylomeDBiP73925.

Family and domain databases

Gene3Di1.10.490.10. 1 hit.
InterProiIPR009050. Globin-like.
IPR012292. Globin/Proto.
IPR019795. Globin_bac-like_CS.
IPR001486. Hemoglobin_trunc.
IPR016339. Hemoglobin_trunc_I.
[Graphical view]
PfamiPF01152. Bac_globin. 1 hit.
[Graphical view]
PIRSFiPIRSF002030. Globin_Protozoa/Cyanobacteria. 1 hit.
SUPFAMiSSF46458. SSF46458. 1 hit.
PROSITEiPS01213. GLOBIN_FAM_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P73925-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTLYEKLGG TTAVDLAVDK FYERVLQDDR IKHFFADVDM AKQRAHQKAF
60 70 80 90 100
LTYAFGGTDK YDGRYMREAH KELVENHGLN GEHFDAVAED LLATLKEMGV
110 120
PEDLIAEVAA VAGAPAHKRD VLNQ
Length:124
Mass (Da):13,868
Last modified:February 1, 1997 - v1
Checksum:i8F53B809B8358844
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA17991.1.
PIRiS75129.

Genome annotation databases

EnsemblBacteriaiBAA17991; BAA17991; BAA17991.
KEGGisyn:slr2097.
PATRICi23839988. VBISynSp132158_1554.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA17991.1.
PIRiS75129.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1MWBNMR-A2-124[»]
1RTXX-ray1.80A2-124[»]
1S69X-ray1.68A1-124[»]
1S6AX-ray1.69A1-124[»]
2HZ1X-ray1.80A2-124[»]
2HZ2X-ray2.00A2-124[»]
2HZ3X-ray1.90A2-124[»]
ProteinModelPortaliP73925.
SMRiP73925.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA17991; BAA17991; BAA17991.
KEGGisyn:slr2097.
PATRICi23839988. VBISynSp132158_1554.

Phylogenomic databases

HOGENOMiHOG000262697.
InParanoidiP73925.
KOiK06886.
OMAiISHFFED.
PhylomeDBiP73925.

Enzyme and pathway databases

BioCyciMetaCyc:MONOMER-19373.

Miscellaneous databases

EvolutionaryTraceiP73925.

Family and domain databases

Gene3Di1.10.490.10. 1 hit.
InterProiIPR009050. Globin-like.
IPR012292. Globin/Proto.
IPR019795. Globin_bac-like_CS.
IPR001486. Hemoglobin_trunc.
IPR016339. Hemoglobin_trunc_I.
[Graphical view]
PfamiPF01152. Bac_globin. 1 hit.
[Graphical view]
PIRSFiPIRSF002030. Globin_Protozoa/Cyanobacteria. 1 hit.
SUPFAMiSSF46458. SSF46458. 1 hit.
PROSITEiPS01213. GLOBIN_FAM_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiTRHBN_SYNY3
AccessioniPrimary (citable) accession number: P73925
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 16, 2001
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 116 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.