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Protein
Submitted name:

Sll1961 protein

Gene

sll1961

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi85 – 104H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Sll1961 proteinImported
Gene namesi
Ordered Locus Names:sll1961Imported
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)Imported
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaSynechococcalesMerismopediaceaeSynechocystis
Proteomesi
  • UP000001425 Componenti: Chromosome

PTM / Processingi

Proteomic databases

PRIDEiP73804.

Interactioni

Protein-protein interaction databases

IntActiP73804. 1 interactor.

Structurei

3D structure databases

ProteinModelPortaliP73804.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini57 – 125HTH gntR-type DNA-bindingInterPro annotationAdd BLAST69

Phylogenomic databases

HOGENOMiHOG000233235.
InParanoidiP73804.
KOiK07978.
OMAiNTISKVY.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00392. GntR. 1 hit.
SMARTiView protein in SMART
SM00345. HTH_GNTR. 1 hit.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS50949. HTH_GNTR. 1 hit.

Sequencei

Sequence statusi: Complete.

P73804-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMAWARLPVA IKTKPSMNLS PVRAVLSPGM KSGLNLPTPR LPFPKMLQFQ
60 70 80 90 100
IQNDSEIPAS KQLFDQIRFA IASRQYHPGH RLPSTRQLAM MTGLHRNTIS
110 120 130 140 150
KVYQNLEDAG LVESIAGSGI YVKAPSTEEG MILDGPLFRE YPEASQLIQK
160 170 180 190 200
TIDELLGQGL NLSQVKELCL ETIDWRLRST ARVLVTVPQR DIGAGQLILN
210 220 230 240 250
ELEQALVIPV QLVPMETLKQ TLSELPSGTV VTSRYFLAEA ESIATPYDVR
260 270 280 290 300
VIPVDIYDYS KELELVKALP ENSCLGIVSL SPGILTIAEI LIHSLRGESL
310 320 330 340 350
FLKSALVSDP QKLRSLVRTA RTIITDPASE PIVRQAIEAE RHDLIRMPEI
360 370 380
ICSEHYIGEK SIAILKRELG LGEEETEEEG KSTKVATA
Length:388
Mass (Da):42,962
Last modified:February 1, 1997 - v1
Checksum:i0BE0EB2568966602
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA17858.1.
PIRiS74897.

Genome annotation databases

EnsemblBacteriaiBAA17858; BAA17858; BAA17858.
KEGGisyn:sll1961.
PATRICi23839671. VBISynSp132158_1397.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA17858.1.
PIRiS74897.

3D structure databases

ProteinModelPortaliP73804.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP73804. 1 interactor.

Proteomic databases

PRIDEiP73804.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA17858; BAA17858; BAA17858.
KEGGisyn:sll1961.
PATRICi23839671. VBISynSp132158_1397.

Phylogenomic databases

HOGENOMiHOG000233235.
InParanoidiP73804.
KOiK07978.
OMAiNTISKVY.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00392. GntR. 1 hit.
SMARTiView protein in SMART
SM00345. HTH_GNTR. 1 hit.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS50949. HTH_GNTR. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiP73804_SYNY3
AccessioniPrimary (citable) accession number: P73804
Entry historyiIntegrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: February 15, 2017
This is version 107 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.