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Protein
Submitted name:

RNA polymerase sigma factor

Gene

rpoD

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.SAAS annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingSAAS annotation, Sigma factorSAAS annotation
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase sigma factorImported
Gene namesi
Name:rpoDImported
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)Imported
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaSynechococcalesMerismopediaceaeSynechocystis
Proteomesi
  • UP000001425 Componenti: Chromosome

PTM / Processingi

Proteomic databases

PaxDbiP73710
PRIDEiP73710

Interactioni

Protein-protein interaction databases

IntActiP73710, 4 interactors
STRINGi1148.SYNGTS_1181

Structurei

3D structure databases

ProteinModelPortaliP73710
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini330 – 356RNA_pol_sigma70InterPro annotationAdd BLAST27

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili213 – 234Sequence analysisAdd BLAST22

Sequence similaritiesi

Belongs to the sigma-70 factor family.SAAS annotation

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

HOGENOMiHOG000270273
KOiK03087
OMAiQIQSKAM
PhylomeDBiP73710

Family and domain databases

Gene3Di1.10.10.10, 2 hits
InterProiView protein in InterPro
IPR014284 RNA_pol_sigma-70_dom
IPR000943 RNA_pol_sigma70
IPR009042 RNA_pol_sigma70_r1_2
IPR007627 RNA_pol_sigma70_r2
IPR007624 RNA_pol_sigma70_r3
IPR007630 RNA_pol_sigma70_r4
IPR013325 RNA_pol_sigma_r2
IPR013324 RNA_pol_sigma_r3/r4-like
IPR017848 RNA_pol_sigma_RpoD_cyanobac
IPR036388 WH-like_DNA-bd_sf
PfamiView protein in Pfam
PF00140 Sigma70_r1_2, 1 hit
PF04542 Sigma70_r2, 1 hit
PF04539 Sigma70_r3, 1 hit
PF04545 Sigma70_r4, 1 hit
PRINTSiPR00046 SIGMA70FCT
SUPFAMiSSF88659 SSF88659, 2 hits
SSF88946 SSF88946, 1 hit
TIGRFAMsiTIGR02997 Sig70-cyanoRpoD, 1 hit
TIGR02937 sigma70-ECF, 1 hit
PROSITEiView protein in PROSITE
PS00716 SIGMA70_2, 1 hit

Sequencei

Sequence statusi: Complete.

P73710-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDMSSLSTP NTSAVDQWQA LDGLADGQAI ANDDPPAIEV TLGDGQQGSF
60 70 80 90 100
NKAVSEDTVG AFFKEMARYP LLSAAEEVEL ARQIRLLVSA EDVRQQLTQQ
110 120 130 140 150
LERTPSLQEW GQALEFPQVR QFEIWLYQLR AAKRRMIRSN LRLVVSIAKR
160 170 180 190 200
YLNRGVPFLD LIQEGAIGLN RAAEKFDPDK GYKFSTYAYW WIRQAITRTI
210 220 230 240 250
ANDARTIRLP IHVVEKLNKI KKAQRSLKQE LKRNPNEGEL AAALDITPAQ
260 270 280 290 300
LRQLLQLRRQ SLSLNHRVGK GEDTELVDLL EDQQLQLPED LMNESMLRRE
310 320 330 340 350
IVEVLAEVLT EREMEVICLR YGIASHQSYT LEEVGNMFNL SRERVRQIQS
360
KAMRKLRRPQ VARRLKGWL
Length:369
Mass (Da):42,363
Last modified:February 1, 1997 - v1
Checksum:iDA5544D7FAD00DFC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA Translation: BAA17757.1
PIRiS77199

Genome annotation databases

EnsemblBacteriaiBAA17757; BAA17757; BAA17757
KEGGisyn:sll1689

Similar proteinsi

Entry informationi

Entry nameiP73710_SYNY3
AccessioniPrimary (citable) accession number: P73710
Entry historyiIntegrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: April 25, 2018
This is version 133 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health