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Protein
Submitted name:

RNA polymerase sigma factor

Gene

rpoD

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.SAAS annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Sigma factorSAAS annotation

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase sigma factorImported
Gene namesi
Name:rpoDImported
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)Imported
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaSynechococcalesMerismopediaceaeSynechocystis
Proteomesi
  • UP000001425 Componenti: Chromosome

PTM / Processingi

Proteomic databases

PRIDEiP73710.

Interactioni

Protein-protein interaction databases

IntActiP73710. 4 interactors.

Structurei

3D structure databases

ProteinModelPortaliP73710.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini330 – 356RNA_pol_sigma70InterPro annotationAdd BLAST27

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili213 – 234Sequence analysisAdd BLAST22

Sequence similaritiesi

Belongs to the sigma-70 factor family.SAAS annotation

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

HOGENOMiHOG000270273.
KOiK03087.
OMAiSQPYTLE.
PhylomeDBiP73710.

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR017848. RNA_pol_sigma_RpoD_cyanobac.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02997. Sig70-cyanoRpoD. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS00716. SIGMA70_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P73710-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDMSSLSTP NTSAVDQWQA LDGLADGQAI ANDDPPAIEV TLGDGQQGSF
60 70 80 90 100
NKAVSEDTVG AFFKEMARYP LLSAAEEVEL ARQIRLLVSA EDVRQQLTQQ
110 120 130 140 150
LERTPSLQEW GQALEFPQVR QFEIWLYQLR AAKRRMIRSN LRLVVSIAKR
160 170 180 190 200
YLNRGVPFLD LIQEGAIGLN RAAEKFDPDK GYKFSTYAYW WIRQAITRTI
210 220 230 240 250
ANDARTIRLP IHVVEKLNKI KKAQRSLKQE LKRNPNEGEL AAALDITPAQ
260 270 280 290 300
LRQLLQLRRQ SLSLNHRVGK GEDTELVDLL EDQQLQLPED LMNESMLRRE
310 320 330 340 350
IVEVLAEVLT EREMEVICLR YGIASHQSYT LEEVGNMFNL SRERVRQIQS
360
KAMRKLRRPQ VARRLKGWL
Length:369
Mass (Da):42,363
Last modified:February 1, 1997 - v1
Checksum:iDA5544D7FAD00DFC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA17757.1.
PIRiS77199.

Genome annotation databases

EnsemblBacteriaiBAA17757; BAA17757; BAA17757.
KEGGisyn:sll1689.
PATRICi23839448. VBISynSp132158_1288.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA17757.1.
PIRiS77199.

3D structure databases

ProteinModelPortaliP73710.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP73710. 4 interactors.

Proteomic databases

PRIDEiP73710.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA17757; BAA17757; BAA17757.
KEGGisyn:sll1689.
PATRICi23839448. VBISynSp132158_1288.

Phylogenomic databases

HOGENOMiHOG000270273.
KOiK03087.
OMAiSQPYTLE.
PhylomeDBiP73710.

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR017848. RNA_pol_sigma_RpoD_cyanobac.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02997. Sig70-cyanoRpoD. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS00716. SIGMA70_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiP73710_SYNY3
AccessioniPrimary (citable) accession number: P73710
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 126 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.