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P73666

- P73666_SYNY3

UniProt

P73666 - P73666_SYNY3

Protein
Submitted name:

RNA polymerase sigma factor

Gene

rpoD

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 94 (01 Oct 2014)
      Sequence version 1 (01 Feb 1997)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW
    2. sequence-specific DNA binding transcription factor activity Source: InterPro
    3. sigma factor activity Source: UniProtKB-KW

    GO - Biological processi

    1. DNA-templated transcription, initiation Source: InterPro

    Keywords - Molecular functioni

    Sigma factorSAAS annotation

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-bindingSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    RNA polymerase sigma factorImported
    Gene namesi
    Name:rpoDImported
    OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)Imported
    Taxonomic identifieri1111708 [NCBI]
    Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
    ProteomesiUP000001425: Chromosome

    Interactioni

    Protein-protein interaction databases

    DIPiDIP-48811N.
    IntActiP73666. 21 interactions.
    STRINGi1148.sll2012.

    Structurei

    3D structure databases

    ProteinModelPortaliP73666.
    SMRiP73666. Positions 66-153.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG0568.
    HOGENOMiHOG000270273.
    KOiK03087.
    OMAiEILYGKQ.
    PhylomeDBiP73666.

    Family and domain databases

    Gene3Di1.10.10.10. 2 hits.
    InterProiIPR014284. RNA_pol_sigma-70_dom.
    IPR000943. RNA_pol_sigma70.
    IPR009042. RNA_pol_sigma70_r1_2.
    IPR007627. RNA_pol_sigma70_r2.
    IPR007624. RNA_pol_sigma70_r3.
    IPR007630. RNA_pol_sigma70_r4.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR017848. RNA_pol_sigma_RpoD_cyanobac.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF00140. Sigma70_r1_2. 1 hit.
    PF04542. Sigma70_r2. 1 hit.
    PF04539. Sigma70_r3. 1 hit.
    PF04545. Sigma70_r4. 1 hit.
    [Graphical view]
    PRINTSiPR00046. SIGMA70FCT.
    SUPFAMiSSF88659. SSF88659. 2 hits.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsiTIGR02997. Sig70-cyanoRpoD. 1 hit.
    TIGR02937. sigma70-ECF. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P73666-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTARTSPDSV RAYLREIGRV PLLTHEEEIV YAKQIQQVVS LNEIKKSLAE    50
    GKDGEPVSPS EWAKAADLSI RELEKAIKEG ERAKRKMVEA NLRLVVSVAK 100
    KYLKRNLDLL DLIQEGTIGM QRGVEKFDPT KGYRFSTYAY WWIRQAITRA 150
    IAEKSRTIRL PIHITEKLNK IKKAQRQLSQ EKGRAASIAE LAEHLELTPK 200
    QVREYLERSR HPLSLDLRVG DNQDTELGDL LEDDGPLPED FATYASLQLD 250
    LDSLMAELTP QQREVLILRF GLNDGQPLTL ASIGSMLSIS RERVRQIERE 300
    ALNKLRKRKS MIQEYLAS 318
    Length:318
    Mass (Da):36,342
    Last modified:February 1, 1997 - v1
    Checksum:iD93942CEB50C0D21
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000022 Genomic DNA. Translation: BAA17711.1.
    PIRiS77153.
    RefSeqiNP_441031.1. NC_000911.1.
    YP_005651088.1. NC_017277.1.
    YP_007450913.1. NC_020286.1.

    Genome annotation databases

    EnsemblBacteriaiBAA17711; BAA17711; BAA17711.
    GeneIDi954344.
    KEGGisyn:sll2012.
    syy:SYNGTS_1135.
    syz:MYO_111450.
    PATRICi23839352. VBISynSp132158_1240.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000022 Genomic DNA. Translation: BAA17711.1 .
    PIRi S77153.
    RefSeqi NP_441031.1. NC_000911.1.
    YP_005651088.1. NC_017277.1.
    YP_007450913.1. NC_020286.1.

    3D structure databases

    ProteinModelPortali P73666.
    SMRi P73666. Positions 66-153.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    DIPi DIP-48811N.
    IntActi P73666. 21 interactions.
    STRINGi 1148.sll2012.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAA17711 ; BAA17711 ; BAA17711 .
    GeneIDi 954344.
    KEGGi syn:sll2012.
    syy:SYNGTS_1135.
    syz:MYO_111450.
    PATRICi 23839352. VBISynSp132158_1240.

    Phylogenomic databases

    eggNOGi COG0568.
    HOGENOMi HOG000270273.
    KOi K03087.
    OMAi EILYGKQ.
    PhylomeDBi P73666.

    Family and domain databases

    Gene3Di 1.10.10.10. 2 hits.
    InterProi IPR014284. RNA_pol_sigma-70_dom.
    IPR000943. RNA_pol_sigma70.
    IPR009042. RNA_pol_sigma70_r1_2.
    IPR007627. RNA_pol_sigma70_r2.
    IPR007624. RNA_pol_sigma70_r3.
    IPR007630. RNA_pol_sigma70_r4.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR017848. RNA_pol_sigma_RpoD_cyanobac.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF00140. Sigma70_r1_2. 1 hit.
    PF04542. Sigma70_r2. 1 hit.
    PF04539. Sigma70_r3. 1 hit.
    PF04545. Sigma70_r4. 1 hit.
    [Graphical view ]
    PRINTSi PR00046. SIGMA70FCT.
    SUPFAMi SSF88659. SSF88659. 2 hits.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsi TIGR02997. Sig70-cyanoRpoD. 1 hit.
    TIGR02937. sigma70-ECF. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
      Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
      , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
      DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PCC 6803 / KazusaImported.

    Entry informationi

    Entry nameiP73666_SYNY3
    AccessioniPrimary (citable) accession number: P73666
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 1, 1997
    Last sequence update: February 1, 1997
    Last modified: October 1, 2014
    This is version 94 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3