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P73666

- P73666_SYNY3

UniProt

P73666 - P73666_SYNY3

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Protein
Submitted name:

RNA polymerase sigma factor

Gene
rpoD
Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
  3. sigma factor activity Source: UniProtKB-KW

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Sigma factorSAAS annotations

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingSAAS annotations

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase sigma factorImported
Gene namesi
Name:rpoDImported
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425: Chromosome

Interactioni

Protein-protein interaction databases

DIPiDIP-48811N.
IntActiP73666. 21 interactions.
STRINGi1148.sll2012.

Structurei

3D structure databases

ProteinModelPortaliP73666.
SMRiP73666. Positions 66-153.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0568.
HOGENOMiHOG000270273.
KOiK03087.
OMAiEILYGKQ.
PhylomeDBiP73666.

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR017848. RNA_pol_sigma_RpoD_cyanobac.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02997. Sig70-cyanoRpoD. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.

Sequencei

Sequence statusi: Complete.

P73666-1 [UniParc]FASTAAdd to Basket

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MTARTSPDSV RAYLREIGRV PLLTHEEEIV YAKQIQQVVS LNEIKKSLAE    50
GKDGEPVSPS EWAKAADLSI RELEKAIKEG ERAKRKMVEA NLRLVVSVAK 100
KYLKRNLDLL DLIQEGTIGM QRGVEKFDPT KGYRFSTYAY WWIRQAITRA 150
IAEKSRTIRL PIHITEKLNK IKKAQRQLSQ EKGRAASIAE LAEHLELTPK 200
QVREYLERSR HPLSLDLRVG DNQDTELGDL LEDDGPLPED FATYASLQLD 250
LDSLMAELTP QQREVLILRF GLNDGQPLTL ASIGSMLSIS RERVRQIERE 300
ALNKLRKRKS MIQEYLAS 318
Length:318
Mass (Da):36,342
Last modified:February 1, 1997 - v1
Checksum:iD93942CEB50C0D21
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000022 Genomic DNA. Translation: BAA17711.1.
PIRiS77153.
RefSeqiNP_441031.1. NC_000911.1.
YP_005651088.1. NC_017277.1.
YP_007450913.1. NC_020286.1.

Genome annotation databases

EnsemblBacteriaiBAA17711; BAA17711; BAA17711.
GeneIDi954344.
KEGGisyn:sll2012.
syy:SYNGTS_1135.
syz:MYO_111450.
PATRICi23839352. VBISynSp132158_1240.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000022 Genomic DNA. Translation: BAA17711.1 .
PIRi S77153.
RefSeqi NP_441031.1. NC_000911.1.
YP_005651088.1. NC_017277.1.
YP_007450913.1. NC_020286.1.

3D structure databases

ProteinModelPortali P73666.
SMRi P73666. Positions 66-153.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

DIPi DIP-48811N.
IntActi P73666. 21 interactions.
STRINGi 1148.sll2012.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAA17711 ; BAA17711 ; BAA17711 .
GeneIDi 954344.
KEGGi syn:sll2012.
syy:SYNGTS_1135.
syz:MYO_111450.
PATRICi 23839352. VBISynSp132158_1240.

Phylogenomic databases

eggNOGi COG0568.
HOGENOMi HOG000270273.
KOi K03087.
OMAi EILYGKQ.
PhylomeDBi P73666.

Family and domain databases

Gene3Di 1.10.10.10. 2 hits.
InterProi IPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR017848. RNA_pol_sigma_RpoD_cyanobac.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view ]
Pfami PF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view ]
PRINTSi PR00046. SIGMA70FCT.
SUPFAMi SSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsi TIGR02997. Sig70-cyanoRpoD. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / Kazusa.

Entry informationi

Entry nameiP73666_SYNY3
AccessioniPrimary (citable) accession number: P73666
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: July 9, 2014
This is version 93 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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