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P73666 (P73666_SYNY3) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 86. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
RNA polymerase sigma factor EMBL BAA17711.1
Gene names
Name:rpoD EMBL BAA17711.1
OrganismSynechocystis sp. (strain PCC 6803 / Kazusa) [Reference proteome] [HAMAP]
Taxonomic identifier1111708 [NCBI]
Taxonomic lineageBacteria › Cyanobacteria › Oscillatoriophycideae › Chroococcales › Synechocystis ›

Protein attributes

Sequence length318 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
P73666 [UniParc].

Last modified February 1, 1997. Version 1.
Checksum: D93942CEB50C0D21

FASTA31836,342
        10         20         30         40         50         60 
MTARTSPDSV RAYLREIGRV PLLTHEEEIV YAKQIQQVVS LNEIKKSLAE GKDGEPVSPS 

        70         80         90        100        110        120 
EWAKAADLSI RELEKAIKEG ERAKRKMVEA NLRLVVSVAK KYLKRNLDLL DLIQEGTIGM 

       130        140        150        160        170        180 
QRGVEKFDPT KGYRFSTYAY WWIRQAITRA IAEKSRTIRL PIHITEKLNK IKKAQRQLSQ 

       190        200        210        220        230        240 
EKGRAASIAE LAEHLELTPK QVREYLERSR HPLSLDLRVG DNQDTELGDL LEDDGPLPED 

       250        260        270        280        290        300 
FATYASLQLD LDSLMAELTP QQREVLILRF GLNDGQPLTL ASIGSMLSIS RERVRQIERE 

       310 
ALNKLRKRKS MIQEYLAS

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References

[1]"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S. expand/collapse author list , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PCC 6803 / Kazusa.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BA000022 Genomic DNA. Translation: BAA17711.1.
PIRS77153.
RefSeqNP_441031.1. NC_000911.1.
YP_005651088.1. NC_017277.1.
YP_007450913.1. NC_020286.1.

3D structure databases

ProteinModelPortalP73666.
SMRP73666. Positions 66-153.
ModBaseSearch...

Protein-protein interaction databases

DIPDIP-48811N.
IntActP73666. 21 interactions.
STRING1148.sll2012.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAA17711; BAA17711; BAA17711.
GeneID12255334.
14616567.
954344.
KEGGsyn:sll2012.
syy:SYNGTS_1135.
PATRIC23839352. VBISynSp132158_1240.

Phylogenomic databases

eggNOGCOG0568.
HOGENOMHOG000270273.
KOK03087.
OMAMQDEIEN.
ProtClustDBPRK07405.

Family and domain databases

Gene3D1.10.10.10. 2 hits.
InterProIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR017848. RNA_pol_sigma_RpoD_cyanobac.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSPR00046. SIGMA70FCT.
SUPFAMSSF88946. Sigma_r2. 1 hit.
SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMsTIGR02997. Sig70-cyanoRpoD. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
ProtoNetSearch...

Entry information

Entry nameP73666_SYNY3
AccessionPrimary (citable) accession number: P73666
Entry history
Integrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: May 29, 2013
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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