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Protein
Submitted name:

RNA polymerase sigma-E factor

Gene

rpoE

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Sigma factorSAAS annotation

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase sigma-E factorImported
Gene namesi
Name:rpoEImported
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)Imported
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
Proteomesi
  • UP000001425 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

IntActiP73431. 5 interactions.

Structurei

3D structure databases

ProteinModelPortaliP73431.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini54 – 12168Sigma70_r2InterPro annotationAdd
BLAST
Domaini161 – 21353Sigma70_r4_2InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the sigma-70 factor family. ECF subfamily.SAAS annotation

Phylogenomic databases

HOGENOMiHOG000094755.
InParanoidiP73431.
KOiK03088.
OMAiEMDWEIA.
PhylomeDBiP73431.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.

Sequencei

Sequence statusi: Complete.

P73431-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLGKSMNQAV NTNWAIESGG GKLSALPPES LTNVDLILLC QQKTRPDSTA
60 70 80 90 100
FNELLRRYQS HVDKILYHLA PDWQDRADLA QEVWIRVYRN IHRLNEPVKF
110 120 130 140 150
KGWLSRIATN LFYDELRKRK RVSHPISLDA PRRMDDGEID WDIESDYPSP
160 170 180 190 200
DETLSTAEFY ECLRSAIKDL PEAFRTTIIL REIDGLAYEE IAEITGVSLG
210 220
TVKSRIARAR AKLQTFLQPY LAS
Length:223
Mass (Da):25,621
Last modified:February 1, 1997 - v1
Checksum:i64AFBF510BE1DEF8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA17471.1.
PIRiS77368.

Genome annotation databases

EnsemblBacteriaiBAA17471; BAA17471; BAA17471.
KEGGisyn:slr1545.
PATRICi23838812. VBISynSp132158_0972.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA17471.1.
PIRiS77368.

3D structure databases

ProteinModelPortaliP73431.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP73431. 5 interactions.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA17471; BAA17471; BAA17471.
KEGGisyn:slr1545.
PATRICi23838812. VBISynSp132158_0972.

Phylogenomic databases

HOGENOMiHOG000094755.
InParanoidiP73431.
KOiK03088.
OMAiEMDWEIA.
PhylomeDBiP73431.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiP73431_SYNY3
AccessioniPrimary (citable) accession number: P73431
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: July 6, 2016
This is version 122 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.