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Protein
Submitted name:

RNA polymerase sigma-E factor

Gene

rpoE

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingSAAS annotation, Sigma factorSAAS annotation
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase sigma-E factorImported
Gene namesi
Name:rpoEImported
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)Imported
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaSynechococcalesMerismopediaceaeSynechocystis
Proteomesi
  • UP000001425 Componenti: Chromosome

PTM / Processingi

Proteomic databases

PaxDbiP73431

Interactioni

Protein-protein interaction databases

IntActiP73431, 5 interactors
STRINGi1148.SYNGTS_0897

Structurei

3D structure databases

ProteinModelPortaliP73431
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini54 – 121Sigma70_r2InterPro annotationAdd BLAST68
Domaini161 – 213Sigma70_r4_2InterPro annotationAdd BLAST53

Sequence similaritiesi

Belongs to the sigma-70 factor family. ECF subfamily.SAAS annotation

Phylogenomic databases

HOGENOMiHOG000094755
InParanoidiP73431
KOiK03088
OMAiEHADRVY
PhylomeDBiP73431

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR014284 RNA_pol_sigma-70_dom
IPR007627 RNA_pol_sigma70_r2
IPR013249 RNA_pol_sigma70_r4_t2
IPR013325 RNA_pol_sigma_r2
IPR013324 RNA_pol_sigma_r3/r4-like
IPR036388 WH-like_DNA-bd_sf
PfamiView protein in Pfam
PF04542 Sigma70_r2, 1 hit
PF08281 Sigma70_r4_2, 1 hit
SUPFAMiSSF88659 SSF88659, 1 hit
SSF88946 SSF88946, 1 hit
TIGRFAMsiTIGR02937 sigma70-ECF, 1 hit

Sequencei

Sequence statusi: Complete.

P73431-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLGKSMNQAV NTNWAIESGG GKLSALPPES LTNVDLILLC QQKTRPDSTA
60 70 80 90 100
FNELLRRYQS HVDKILYHLA PDWQDRADLA QEVWIRVYRN IHRLNEPVKF
110 120 130 140 150
KGWLSRIATN LFYDELRKRK RVSHPISLDA PRRMDDGEID WDIESDYPSP
160 170 180 190 200
DETLSTAEFY ECLRSAIKDL PEAFRTTIIL REIDGLAYEE IAEITGVSLG
210 220
TVKSRIARAR AKLQTFLQPY LAS
Length:223
Mass (Da):25,621
Last modified:February 1, 1997 - v1
Checksum:i64AFBF510BE1DEF8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA Translation: BAA17471.1
PIRiS77368

Genome annotation databases

EnsemblBacteriaiBAA17471; BAA17471; BAA17471
KEGGisyn:slr1545

Similar proteinsi

Entry informationi

Entry nameiP73431_SYNY3
AccessioniPrimary (citable) accession number: P73431
Entry historyiIntegrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: April 25, 2018
This is version 130 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health