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P73431

- P73431_SYNY3

UniProt

P73431 - P73431_SYNY3

Protein
Submitted name:

RNA polymerase sigma-E factor

Gene

rpoE

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 106 (01 Oct 2014)
      Sequence version 1 (01 Feb 1997)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW
    2. sequence-specific DNA binding transcription factor activity Source: InterPro
    3. sigma factor activity Source: UniProtKB-KW

    GO - Biological processi

    1. DNA-templated transcription, initiation Source: InterPro

    Keywords - Molecular functioni

    Sigma factorSAAS annotation

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-bindingSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    RNA polymerase sigma-E factorImported
    Gene namesi
    Name:rpoEImported
    OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)Imported
    Taxonomic identifieri1111708 [NCBI]
    Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
    ProteomesiUP000001425: Chromosome

    Interactioni

    Protein-protein interaction databases

    IntActiP73431. 5 interactions.
    STRINGi1148.slr1545.

    Structurei

    3D structure databases

    ProteinModelPortaliP73431.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1595.
    HOGENOMiHOG000094755.
    KOiK03088.
    OMAiTTREFYE.
    PhylomeDBiP73431.

    Family and domain databases

    Gene3Di1.10.10.10. 1 hit.
    InterProiIPR014284. RNA_pol_sigma-70_dom.
    IPR007627. RNA_pol_sigma70_r2.
    IPR013249. RNA_pol_sigma70_r4_t2.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF04542. Sigma70_r2. 1 hit.
    PF08281. Sigma70_r4_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF88659. SSF88659. 1 hit.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P73431-1 [UniParc]FASTAAdd to Basket

    « Hide

    MLGKSMNQAV NTNWAIESGG GKLSALPPES LTNVDLILLC QQKTRPDSTA    50
    FNELLRRYQS HVDKILYHLA PDWQDRADLA QEVWIRVYRN IHRLNEPVKF 100
    KGWLSRIATN LFYDELRKRK RVSHPISLDA PRRMDDGEID WDIESDYPSP 150
    DETLSTAEFY ECLRSAIKDL PEAFRTTIIL REIDGLAYEE IAEITGVSLG 200
    TVKSRIARAR AKLQTFLQPY LAS 223
    Length:223
    Mass (Da):25,621
    Last modified:February 1, 1997 - v1
    Checksum:i64AFBF510BE1DEF8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000022 Genomic DNA. Translation: BAA17471.1.
    PIRiS77368.
    RefSeqiNP_440791.1. NC_000911.1.
    YP_005650850.1. NC_017277.1.
    YP_007450674.1. NC_020286.1.

    Genome annotation databases

    EnsemblBacteriaiBAA17471; BAA17471; BAA17471.
    GeneIDi954094.
    KEGGisyn:slr1545.
    syy:SYNGTS_0897.
    syz:MYO_19030.
    PATRICi23838812. VBISynSp132158_0972.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000022 Genomic DNA. Translation: BAA17471.1 .
    PIRi S77368.
    RefSeqi NP_440791.1. NC_000911.1.
    YP_005650850.1. NC_017277.1.
    YP_007450674.1. NC_020286.1.

    3D structure databases

    ProteinModelPortali P73431.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi P73431. 5 interactions.
    STRINGi 1148.slr1545.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAA17471 ; BAA17471 ; BAA17471 .
    GeneIDi 954094.
    KEGGi syn:slr1545.
    syy:SYNGTS_0897.
    syz:MYO_19030.
    PATRICi 23838812. VBISynSp132158_0972.

    Phylogenomic databases

    eggNOGi COG1595.
    HOGENOMi HOG000094755.
    KOi K03088.
    OMAi TTREFYE.
    PhylomeDBi P73431.

    Family and domain databases

    Gene3Di 1.10.10.10. 1 hit.
    InterProi IPR014284. RNA_pol_sigma-70_dom.
    IPR007627. RNA_pol_sigma70_r2.
    IPR013249. RNA_pol_sigma70_r4_t2.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF04542. Sigma70_r2. 1 hit.
    PF08281. Sigma70_r4_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF88659. SSF88659. 1 hit.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsi TIGR02937. sigma70-ECF. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
      Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
      , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
      DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PCC 6803 / KazusaImported.

    Entry informationi

    Entry nameiP73431_SYNY3
    AccessioniPrimary (citable) accession number: P73431
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 1, 1997
    Last sequence update: February 1, 1997
    Last modified: October 1, 2014
    This is version 106 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3