Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

P73431

- P73431_SYNY3

UniProt

P73431 - P73431_SYNY3

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

RNA polymerase sigma-E factor

Gene

rpoE

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
  3. sigma factor activity Source: UniProtKB-KW

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Sigma factorSAAS annotation

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase sigma-E factorImported
Gene namesi
Name:rpoEImported
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)Imported
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425: Chromosome

Interactioni

Protein-protein interaction databases

IntActiP73431. 5 interactions.
STRINGi1148.slr1545.

Structurei

3D structure databases

ProteinModelPortaliP73431.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1595.
HOGENOMiHOG000094755.
InParanoidiP73431.
KOiK03088.
OMAiTTREFYE.
PhylomeDBiP73431.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.

Sequencei

Sequence statusi: Complete.

P73431-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MLGKSMNQAV NTNWAIESGG GKLSALPPES LTNVDLILLC QQKTRPDSTA
60 70 80 90 100
FNELLRRYQS HVDKILYHLA PDWQDRADLA QEVWIRVYRN IHRLNEPVKF
110 120 130 140 150
KGWLSRIATN LFYDELRKRK RVSHPISLDA PRRMDDGEID WDIESDYPSP
160 170 180 190 200
DETLSTAEFY ECLRSAIKDL PEAFRTTIIL REIDGLAYEE IAEITGVSLG
210 220
TVKSRIARAR AKLQTFLQPY LAS
Length:223
Mass (Da):25,621
Last modified:February 1, 1997 - v1
Checksum:i64AFBF510BE1DEF8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA17471.1.
PIRiS77368.
RefSeqiNP_440791.1. NC_000911.1.
YP_005650850.1. NC_017277.1.
YP_007450674.1. NC_020286.1.

Genome annotation databases

EnsemblBacteriaiBAA17471; BAA17471; BAA17471.
GeneIDi954094.
KEGGisyn:slr1545.
PATRICi23838812. VBISynSp132158_0972.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA17471.1 .
PIRi S77368.
RefSeqi NP_440791.1. NC_000911.1.
YP_005650850.1. NC_017277.1.
YP_007450674.1. NC_020286.1.

3D structure databases

ProteinModelPortali P73431.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi P73431. 5 interactions.
STRINGi 1148.slr1545.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAA17471 ; BAA17471 ; BAA17471 .
GeneIDi 954094.
KEGGi syn:slr1545.
PATRICi 23838812. VBISynSp132158_0972.

Phylogenomic databases

eggNOGi COG1595.
HOGENOMi HOG000094755.
InParanoidi P73431.
KOi K03088.
OMAi TTREFYE.
PhylomeDBi P73431.

Family and domain databases

Gene3Di 1.10.10.10. 1 hit.
InterProi IPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view ]
Pfami PF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view ]
SUPFAMi SSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsi TIGR02937. sigma70-ECF. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / KazusaImported.

Entry informationi

Entry nameiP73431_SYNY3
AccessioniPrimary (citable) accession number: P73431
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: November 26, 2014
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3