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P73318

- RL23_SYNY3

UniProt

P73318 - RL23_SYNY3

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Protein

50S ribosomal protein L23

Gene

rplW

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.UniRule annotation

GO - Molecular functioni

  1. nucleotide binding Source: InterPro
  2. rRNA binding Source: UniProtKB-HAMAP
  3. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L23UniRule annotation
Gene namesi
Name:rplWUniRule annotation
Synonyms:rpl23UniRule annotation
Ordered Locus Names:sll1801
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 10110150S ribosomal protein L23PRO_0000129425Add
BLAST

Proteomic databases

PaxDbiP73318.

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome.UniRule annotation

Protein-protein interaction databases

IntActiP73318. 1 interaction.
STRINGi1148.sll1801.

Structurei

3D structure databases

ProteinModelPortaliP73318.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L23P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0089.
HOGENOMiHOG000231366.
InParanoidiP73318.
KOiK02892.
OMAiGKTKRMG.
OrthoDBiEOG6HTP4P.
PhylomeDBiP73318.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
HAMAPiMF_01369_B. Ribosomal_L23_B.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR001014. Ribosomal_L23/L25_CS.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamiPF00276. Ribosomal_L23. 1 hit.
[Graphical view]
SUPFAMiSSF54189. SSF54189. 1 hit.
PROSITEiPS00050. RIBOSOMAL_L23. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P73318-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSKVIDQRRL ADLIIKPIVT EKATLQLEDN KYVFDVRPEA TKPEIKAAIE
60 70 80 90 100
LLFDVKVTGV NTARMPRRKK RVGRFMGFKA QVKRAVVTLK EGDSIQLFPD

V
Length:101
Mass (Da):11,526
Last modified:February 1, 1997 - v1
Checksum:iE29FE6094D49CC13
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA17347.1.
PIRiS77500.
RefSeqiNP_440667.1. NC_000911.1.
YP_005650726.1. NC_017277.1.
YP_007450550.1. NC_020286.1.

Genome annotation databases

EnsemblBacteriaiBAA17347; BAA17347; BAA17347.
GeneIDi953970.
KEGGisyn:sll1801.
PATRICi23838538. VBISynSp132158_0836.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA17347.1 .
PIRi S77500.
RefSeqi NP_440667.1. NC_000911.1.
YP_005650726.1. NC_017277.1.
YP_007450550.1. NC_020286.1.

3D structure databases

ProteinModelPortali P73318.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi P73318. 1 interaction.
STRINGi 1148.sll1801.

Proteomic databases

PaxDbi P73318.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAA17347 ; BAA17347 ; BAA17347 .
GeneIDi 953970.
KEGGi syn:sll1801.
PATRICi 23838538. VBISynSp132158_0836.

Phylogenomic databases

eggNOGi COG0089.
HOGENOMi HOG000231366.
InParanoidi P73318.
KOi K02892.
OMAi GKTKRMG.
OrthoDBi EOG6HTP4P.
PhylomeDBi P73318.

Family and domain databases

Gene3Di 3.30.70.330. 1 hit.
HAMAPi MF_01369_B. Ribosomal_L23_B.
InterProi IPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR001014. Ribosomal_L23/L25_CS.
IPR013025. Ribosomal_L25/23.
[Graphical view ]
Pfami PF00276. Ribosomal_L23. 1 hit.
[Graphical view ]
SUPFAMi SSF54189. SSF54189. 1 hit.
PROSITEi PS00050. RIBOSOMAL_L23. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / Kazusa.

Entry informationi

Entry nameiRL23_SYNY3
AccessioniPrimary (citable) accession number: P73318
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: November 26, 2014
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families
  3. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

External Data

Dasty 3