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P73318

- RL23_SYNY3

UniProt

P73318 - RL23_SYNY3

Protein

50S ribosomal protein L23

Gene

rplW

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.UniRule annotation

    GO - Molecular functioni

    1. nucleotide binding Source: InterPro
    2. rRNA binding Source: UniProtKB-HAMAP
    3. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L23UniRule annotation
    Gene namesi
    Name:rplWUniRule annotation
    Synonyms:rpl23UniRule annotation
    Ordered Locus Names:sll1801
    OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
    Taxonomic identifieri1111708 [NCBI]
    Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
    ProteomesiUP000001425: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 10110150S ribosomal protein L23PRO_0000129425Add
    BLAST

    Proteomic databases

    PaxDbiP73318.

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome.UniRule annotation

    Protein-protein interaction databases

    IntActiP73318. 1 interaction.
    STRINGi1148.sll1801.

    Structurei

    3D structure databases

    ProteinModelPortaliP73318.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L23P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0089.
    HOGENOMiHOG000231366.
    KOiK02892.
    OMAiGKTKRMG.
    OrthoDBiEOG6HTP4P.
    PhylomeDBiP73318.

    Family and domain databases

    Gene3Di3.30.70.330. 1 hit.
    HAMAPiMF_01369_B. Ribosomal_L23_B.
    InterProiIPR012677. Nucleotide-bd_a/b_plait.
    IPR012678. Ribosomal_L23/L15e_core_dom.
    IPR001014. Ribosomal_L23/L25_CS.
    IPR013025. Ribosomal_L25/23.
    [Graphical view]
    PfamiPF00276. Ribosomal_L23. 1 hit.
    [Graphical view]
    SUPFAMiSSF54189. SSF54189. 1 hit.
    PROSITEiPS00050. RIBOSOMAL_L23. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P73318-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSKVIDQRRL ADLIIKPIVT EKATLQLEDN KYVFDVRPEA TKPEIKAAIE    50
    LLFDVKVTGV NTARMPRRKK RVGRFMGFKA QVKRAVVTLK EGDSIQLFPD 100
    V 101
    Length:101
    Mass (Da):11,526
    Last modified:February 1, 1997 - v1
    Checksum:iE29FE6094D49CC13
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000022 Genomic DNA. Translation: BAA17347.1.
    PIRiS77500.
    RefSeqiNP_440667.1. NC_000911.1.
    YP_005650726.1. NC_017277.1.
    YP_007450550.1. NC_020286.1.

    Genome annotation databases

    EnsemblBacteriaiBAA17347; BAA17347; BAA17347.
    GeneIDi953970.
    KEGGisyn:sll1801.
    syy:SYNGTS_0773.
    syz:MYO_17780.
    PATRICi23838538. VBISynSp132158_0836.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000022 Genomic DNA. Translation: BAA17347.1 .
    PIRi S77500.
    RefSeqi NP_440667.1. NC_000911.1.
    YP_005650726.1. NC_017277.1.
    YP_007450550.1. NC_020286.1.

    3D structure databases

    ProteinModelPortali P73318.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi P73318. 1 interaction.
    STRINGi 1148.sll1801.

    Proteomic databases

    PaxDbi P73318.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAA17347 ; BAA17347 ; BAA17347 .
    GeneIDi 953970.
    KEGGi syn:sll1801.
    syy:SYNGTS_0773.
    syz:MYO_17780.
    PATRICi 23838538. VBISynSp132158_0836.

    Phylogenomic databases

    eggNOGi COG0089.
    HOGENOMi HOG000231366.
    KOi K02892.
    OMAi GKTKRMG.
    OrthoDBi EOG6HTP4P.
    PhylomeDBi P73318.

    Family and domain databases

    Gene3Di 3.30.70.330. 1 hit.
    HAMAPi MF_01369_B. Ribosomal_L23_B.
    InterProi IPR012677. Nucleotide-bd_a/b_plait.
    IPR012678. Ribosomal_L23/L15e_core_dom.
    IPR001014. Ribosomal_L23/L25_CS.
    IPR013025. Ribosomal_L25/23.
    [Graphical view ]
    Pfami PF00276. Ribosomal_L23. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54189. SSF54189. 1 hit.
    PROSITEi PS00050. RIBOSOMAL_L23. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
      Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
      , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
      DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PCC 6803 / Kazusa.

    Entry informationi

    Entry nameiRL23_SYNY3
    AccessioniPrimary (citable) accession number: P73318
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: February 1, 1997
    Last modified: October 1, 2014
    This is version 82 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families
    3. Synechocystis PCC 6803
      Synechocystis (strain PCC 6803): entries and gene names

    External Data

    Dasty 3