P73294 (RL13_SYNY3) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
50S ribosomal protein L13

Gene names

Name:	rplM
Synonyms:	rpl13
Ordered Locus Names:	sll1821

Organism

Synechocystis sp. (strain PCC 6803 / Kazusa) [Reference proteome] [HAMAP]

Taxonomic identifier

1111708 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Cyanobacteria › Oscillatoriophycideae › Chroococcales › Synechocystis › Synechocystis sp. PCC 6803

Protein attributes

Sequence length	151 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly By similarity. HAMAP-Rule MF_01366
Subunit structure	Part of the 50S ribosomal subunit By similarity.
Sequence similarities	Belongs to the ribosomal protein L13P family.

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 151	151	50S ribosomal protein L13 HAMAP-Rule MF_01366		PRO_0000133752

Sequences

	Sequence		Length	Mass (Da)
	P73294 [UniParc]. Last modified February 1, 1997. Version 1. Checksum: C9BCBA1B0F4CCA22	FASTA	151	16,991
	10 20 30 40 50 60 MNKTVLPTID NLDHKWYVID AEGQRLGRLA TEVATILRGK NKPTFTPHMD TGDFVIIINA 70 80 90 100 110 120 EKIEVTGRKR EQKLYRRHSG RPGGMKEETF EKLQVRLPER IVESAVRGML PKNSLGRKLF 130 140 150 TKLKVYAGPS HPHAAQQPET LVINTIPAGA N

References

[1]

"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions." Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S. , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S. DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: PCC 6803 / Kazusa.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BA000022 Genomic DNA. Translation: BAA17322.1.
PIR	S77475.
RefSeq	NP_440642.1. NC_000911.1. YP_005650701.1. NC_017277.1. YP_007450525.1. NC_020286.1.
3D structure databases
ProteinModelPortal	P73294.
SMR	P73294. Positions 15-138.
ModBase	Search...
Protein-protein interaction databases
IntAct	P73294. 1 interaction.
STRING	1148.sll1821.
Proteomic databases
PaxDb	P73294.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAA17322; BAA17322; BAA17322.
GeneID	12256393. 14616175. 953945.
KEGG	syn:sll1821. syy:SYNGTS_0748.
PATRIC	23838488. VBISynSp132158_0811.
Phylogenomic databases
eggNOG	COG0102.
HOGENOM	HOG000225286.
KO	K02871.
OMA	FEITQVA.
ProtClustDB	PRK09216.
Family and domain databases
Gene3D	3.90.1180.10. 1 hit.
HAMAP	MF_01366_B. Ribosomal_L13_B.
InterPro	IPR005822. Ribosomal_L13. IPR005823. Ribosomal_L13_bac-type. IPR023563. Ribosomal_L13_CS. IPR023564. Ribosomal_L13_dom. [Graphical view]
PANTHER	PTHR11545. PTHR11545. 1 hit.
Pfam	PF00572. Ribosomal_L13. 1 hit. [Graphical view]
PIRSF	PIRSF002181. Ribosomal_L13. 1 hit.
SUPFAM	SSF52161. Ribosomal_L13. 1 hit.
TIGRFAMs	TIGR01066. rplM_bact. 1 hit.
PROSITE	PS00783. RIBOSOMAL_L13. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RL13_SYNY3

Accession

Primary (citable) accession number: P73294

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	February 1, 1997
Last modified:	May 1, 2013
This is version 80 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program