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P73270

- SPEB2_SYNY3

UniProt

P73270 - SPEB2_SYNY3

Protein

Probable agmatinase 2

Gene

speB2

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 89 (01 Oct 2014)
      Sequence version 1 (01 Feb 1997)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Agmatine + H2O = putrescine + urea.

    Cofactori

    Manganese.PROSITE-ProRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi174 – 1741ManganesePROSITE-ProRule annotation
    Metal bindingi199 – 1991ManganesePROSITE-ProRule annotation
    Metal bindingi201 – 2011ManganesePROSITE-ProRule annotation
    Metal bindingi203 – 2031ManganesePROSITE-ProRule annotation
    Metal bindingi291 – 2911ManganesePROSITE-ProRule annotation
    Metal bindingi293 – 2931ManganesePROSITE-ProRule annotation

    GO - Molecular functioni

    1. agmatinase activity Source: UniProtKB-EC
    2. metal ion binding Source: UniProtKB-KW

    GO - Biological processi

    1. putrescine biosynthetic process Source: UniProtKB-KW

    Keywords - Molecular functioni

    Hydrolase

    Keywords - Biological processi

    Putrescine biosynthesis

    Keywords - Ligandi

    Manganese, Metal-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable agmatinase 2 (EC:3.5.3.11)
    Alternative name(s):
    Agmatine ureohydrolase 2
    Short name:
    AUH 2
    Gene namesi
    Name:speB2
    Ordered Locus Names:sll1077
    OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
    Taxonomic identifieri1111708 [NCBI]
    Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
    ProteomesiUP000001425: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 390390Probable agmatinase 2PRO_0000173745Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    IntActiP73270. 1 interaction.
    STRINGi1148.sll1077.

    Structurei

    3D structure databases

    ProteinModelPortaliP73270.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the arginase family. Agmatinase subfamily.PROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiCOG0010.
    HOGENOMiHOG000224476.
    KOiK01480.
    OMAiKPDYSLY.
    OrthoDBiEOG6R2GW5.
    PhylomeDBiP73270.

    Family and domain databases

    Gene3Di3.40.800.10. 1 hit.
    InterProiIPR005925. Agmatinase-rel.
    IPR006035. Ureohydrolase.
    IPR023696. Ureohydrolase_domain.
    IPR020855. Ureohydrolase_Mn_BS.
    [Graphical view]
    PANTHERiPTHR11358. PTHR11358. 1 hit.
    PfamiPF00491. Arginase. 1 hit.
    [Graphical view]
    PIRSFiPIRSF036979. Arginase. 1 hit.
    PRINTSiPR00116. ARGINASE.
    TIGRFAMsiTIGR01230. agmatinase. 1 hit.
    PROSITEiPS01053. ARGINASE_1. 1 hit.
    PS51409. ARGINASE_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P73270-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSDATPFRPP SEAEEALIKE TRLPLTGWQQ EVDQGLTYGL EAAASIKDRS    50
    IPTFSRGELP HYAGINTFMK APYLEDVREV GKYDVAIVGV PHDSGTTYRP 100
    GTRFGPQGIR RISALYTPYN FEMGVDLREQ ISLCDVGDIF TIPANNEKSF 150
    DQISKGIAHI FSSGAFPIIL GGDHSIGFPT VRGICRHLGD KKVGIIHFDR 200
    HVDTQETDLD ERMHTCPWFH ATNMANAPAK NLVQLGIGGW QVPRQGVKVC 250
    RERATNILTV TDITEMSLDA AADFAIARAT DGTDCVWISF DIDCIDAGFV 300
    PGTGWPEPGG LLPREALYLL KRIIRETNVC GMEVVEVSPP YDISDMTSLM 350
    ATRVICDTMA HLVVSGQLPR TEKPAYIHAE ANMAVDEPWQ 390
    Length:390
    Mass (Da):42,964
    Last modified:February 1, 1997 - v1
    Checksum:i7612DBDD6C29A133
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000022 Genomic DNA. Translation: BAA17298.1.
    PIRiS77451.
    RefSeqiNP_440618.1. NC_000911.1.
    YP_005650676.1. NC_017277.1.
    YP_007450501.1. NC_020286.1.

    Genome annotation databases

    EnsemblBacteriaiBAA17298; BAA17298; BAA17298.
    GeneIDi953921.
    KEGGisyn:sll1077.
    syy:SYNGTS_0723.
    syz:MYO_17290.
    PATRICi23838432. VBISynSp132158_0783.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000022 Genomic DNA. Translation: BAA17298.1 .
    PIRi S77451.
    RefSeqi NP_440618.1. NC_000911.1.
    YP_005650676.1. NC_017277.1.
    YP_007450501.1. NC_020286.1.

    3D structure databases

    ProteinModelPortali P73270.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi P73270. 1 interaction.
    STRINGi 1148.sll1077.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAA17298 ; BAA17298 ; BAA17298 .
    GeneIDi 953921.
    KEGGi syn:sll1077.
    syy:SYNGTS_0723.
    syz:MYO_17290.
    PATRICi 23838432. VBISynSp132158_0783.

    Phylogenomic databases

    eggNOGi COG0010.
    HOGENOMi HOG000224476.
    KOi K01480.
    OMAi KPDYSLY.
    OrthoDBi EOG6R2GW5.
    PhylomeDBi P73270.

    Family and domain databases

    Gene3Di 3.40.800.10. 1 hit.
    InterProi IPR005925. Agmatinase-rel.
    IPR006035. Ureohydrolase.
    IPR023696. Ureohydrolase_domain.
    IPR020855. Ureohydrolase_Mn_BS.
    [Graphical view ]
    PANTHERi PTHR11358. PTHR11358. 1 hit.
    Pfami PF00491. Arginase. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF036979. Arginase. 1 hit.
    PRINTSi PR00116. ARGINASE.
    TIGRFAMsi TIGR01230. agmatinase. 1 hit.
    PROSITEi PS01053. ARGINASE_1. 1 hit.
    PS51409. ARGINASE_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
      Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
      , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
      DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PCC 6803 / Kazusa.
    2. "Arginine catabolism in the cyanobacterium Synechocystis sp. strain PCC 6803 involves the urea cycle and arginase pathway."
      Quintero M.J., Muro-Pastor A.M., Herrero A., Flores E.
      J. Bacteriol. 182:1008-1015(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: FUNCTION.

    Entry informationi

    Entry nameiSPEB2_SYNY3
    AccessioniPrimary (citable) accession number: P73270
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 29, 2004
    Last sequence update: February 1, 1997
    Last modified: October 1, 2014
    This is version 89 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families
    2. Synechocystis PCC 6803
      Synechocystis (strain PCC 6803): entries and gene names

    External Data

    Dasty 3