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Protein
Submitted name:

NADH dehydrogenase subunit 4

Gene

ndhD

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotation

Keywords - Ligandi

NADUniRule annotation, NADPUniRule annotation, PlastoquinoneUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
NADH dehydrogenase subunit 4Imported
Gene namesi
Name:ndhDImported
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)Imported
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
Proteomesi
  • UP000001425 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei12 – 3221HelicalSequence analysisAdd
BLAST
Transmembranei39 – 5820HelicalSequence analysisAdd
BLAST
Transmembranei78 – 9821HelicalSequence analysisAdd
BLAST
Transmembranei128 – 14821HelicalSequence analysisAdd
BLAST
Transmembranei160 – 17920HelicalSequence analysisAdd
BLAST
Transmembranei199 – 21820HelicalSequence analysisAdd
BLAST
Transmembranei255 – 27622HelicalSequence analysisAdd
BLAST
Transmembranei283 – 30119HelicalSequence analysisAdd
BLAST
Transmembranei336 – 36025HelicalSequence analysisAdd
BLAST
Transmembranei372 – 39423HelicalSequence analysisAdd
BLAST
Transmembranei406 – 42924HelicalSequence analysisAdd
BLAST
Transmembranei435 – 45723HelicalSequence analysisAdd
BLAST
Transmembranei469 – 48618HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Keywords - PTMi

QuinoneUniRule annotation

Interactioni

Protein-protein interaction databases

IntActiP73225. 1 interaction.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini126 – 387262Proton_antipo_MInterPro annotationAdd
BLAST

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

HOGENOMiHOG000036004.
KOiK05568.
OMAiTRSEKNT.
PhylomeDBiP73225.

Family and domain databases

InterProiIPR001750. ND/Mrp_mem.
[Graphical view]
PfamiPF00361. Proton_antipo_M. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P73225-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTLFAVSAEF NAAPWATVVI CLALMAGFTG YLLPATIRFL TLAVCFGTGF
60 70 80 90 100
LAYLGFSLPE AQSWYLLDSF GVVFQLDALS GYFLLTNALV TLAVLVYCWN
110 120 130 140 150
TGRSAFFYAQ LIILHASLNS AFLCADFMSL YVALEVVAIA AFCLMTYPRE
160 170 180 190 200
PRIIWLGLRY LLLSNTAMLF YLIGVALVYK TNQSFAFSGL TQAPPEAIAL
210 220 230 240 250
IFLGLLTKGG IFLAGLWLPQ THGEAATPVS AMLSGAVVKA GALPLLRCAL
260 270 280 290 300
LSDQLLLLVQ ILGVATALFG VVYAMLAKDS KRMLAFHTVS QMGFVLAAPI
310 320 330 340 350
AGGFYALSHG LVKSSLFLLA GNLPSRDFKV LKKTPIAAGF WVPLLLASSS
360 370 380 390 400
IAGFPLLAGF EAKTLTLKGL PPWLAIALNI AAVGTAISFS KFVFLKPTFV
410 420 430 440 450
GKTYPLGLGL ALVVLLGGLA VGNVVYWQAF TPSNLIKATL TCVVGAGLYW
460 470 480
VVVKRLTLKL PDEGEQVDHL LGMMSISLTI LFAWILV
Length:487
Mass (Da):52,116
Last modified:February 1, 1997 - v1
Checksum:i08EE7142DD6A0AC1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA17252.1.
PIRiS75338.

Genome annotation databases

EnsemblBacteriaiBAA17252; BAA17252; BAA17252.
KEGGisyn:slr2007.
PATRICi23838332. VBISynSp132158_0733.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA17252.1.
PIRiS75338.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP73225. 1 interaction.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA17252; BAA17252; BAA17252.
KEGGisyn:slr2007.
PATRICi23838332. VBISynSp132158_0733.

Phylogenomic databases

HOGENOMiHOG000036004.
KOiK05568.
OMAiTRSEKNT.
PhylomeDBiP73225.

Family and domain databases

InterProiIPR001750. ND/Mrp_mem.
[Graphical view]
PfamiPF00361. Proton_antipo_M. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / KazusaImported.

Entry informationi

Entry nameiP73225_SYNY3
AccessioniPrimary (citable) accession number: P73225
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: March 16, 2016
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.