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Protein

Probable RuBisCO transcriptional regulator

Gene

rbcR

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi23 – 42H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Probable RuBisCO transcriptional regulator
Gene namesi
Name:rbcR
Ordered Locus Names:sll0998
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaSynechococcalesMerismopediaceaeSynechocystis
Proteomesi
  • UP000001425 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002800821 – 345Probable RuBisCO transcriptional regulatorAdd BLAST345

Proteomic databases

PRIDEiP73123.

Structurei

3D structure databases

ProteinModelPortaliP73123.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 63HTH lysR-typePROSITE-ProRule annotationAdd BLAST58

Sequence similaritiesi

Contains 1 HTH lysR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

InParanoidiP73123.
OMAiYLMPRMI.
PhylomeDBiP73123.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P73123-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDIPFTLDQ LRILKAIASE GSFKRAADTL YVSQPAVSLQ VQNLEKQLSV
60 70 80 90 100
PLFDRGGRKA QLTEAGHLLL NYGEKIITLC QETCRAIEDL QNLQGGTLIV
110 120 130 140 150
GASQTTGTYL LPRMIGMFRQ QYPDVTVQLQ VHSTRRTAWG VANGQVDLAI
160 170 180 190 200
IGGEVPAELQ ETLTVLPYAE DELALILPVL HPLAQAETIQ KEDLYKLKFI
210 220 230 240 250
SLDSQSTIRK VIDKVLSQGE IDTKRLKIEM ELNSIEAIKN AVQSGLGAAF
260 270 280 290 300
VSTTAIEKEL EMNVLHIAPI KNVEIRRVLS VIINPNRYRS KASAAFIREV
310 320 330 340
LPQFSTHPDA LDPERLFANP YSSNNGDRQG DGKDGKGSIE IDSVT
Length:345
Mass (Da):38,018
Last modified:February 1, 1997 - v1
Checksum:i6948AD5024ACE95C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA17149.1.
PIRiS75235.

Genome annotation databases

EnsemblBacteriaiBAA17149; BAA17149; BAA17149.
KEGGisyn:sll0998.
PATRICi23838110. VBISynSp132158_0624.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA17149.1.
PIRiS75235.

3D structure databases

ProteinModelPortaliP73123.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiP73123.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA17149; BAA17149; BAA17149.
KEGGisyn:sll0998.
PATRICi23838110. VBISynSp132158_0624.

Phylogenomic databases

InParanoidiP73123.
OMAiYLMPRMI.
PhylomeDBiP73123.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRBCR_SYNY3
AccessioniPrimary (citable) accession number: P73123
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 6, 2007
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 110 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.