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P73033

- GPDA_SYNY3

UniProt

P73033 - GPDA_SYNY3

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Protein

Glycerol-3-phosphate dehydrogenase [NAD(P)+]

Gene

gpsA

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

sn-glycerol 3-phosphate + NAD(P)+ = glycerone phosphate + NAD(P)H.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei88 – 881NAD; via amide nitrogenUniRule annotation
Binding sitei88 – 881SubstrateUniRule annotation
Binding sitei120 – 1201NAD; via amide nitrogenUniRule annotation
Active sitei171 – 1711Proton acceptorUniRule annotation
Binding sitei235 – 2351NADUniRule annotation
Binding sitei261 – 2611NADUniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi16 – 216NADUniRule annotation

GO - Molecular functioni

  1. glycerol-3-phosphate dehydrogenase [NAD(P)+] activity Source: UniProtKB-HAMAP
  2. glycerol-3-phosphate dehydrogenase [NAD+] activity Source: UniProtKB-EC
  3. glycerol-3-phosphate dehydrogenase [NADP+] activity Source: UniProtKB-EC
  4. NAD binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
  2. glycerol-3-phosphate biosynthetic process Source: UniProtKB-HAMAP
  3. glycerol-3-phosphate catabolic process Source: InterPro
  4. glycerophospholipid metabolic process Source: UniProtKB-UniPathway
  5. phospholipid biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Biological processi

Lipid biosynthesis, Lipid metabolism, Phospholipid biosynthesis, Phospholipid metabolism

Keywords - Ligandi

NAD

Enzyme and pathway databases

UniPathwayiUPA00940.

Names & Taxonomyi

Protein namesi
Recommended name:
Glycerol-3-phosphate dehydrogenase [NAD(P)+]UniRule annotation (EC:1.1.1.94UniRule annotation)
Alternative name(s):
NAD(P)H-dependent glycerol-3-phosphate dehydrogenaseUniRule annotation
Gene namesi
Name:gpsAUniRule annotation
Ordered Locus Names:slr1755
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425: Chromosome

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. glycerol-3-phosphate dehydrogenase complex Source: InterPro
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 317317Glycerol-3-phosphate dehydrogenase [NAD(P)+]PRO_0000138047Add
BLAST

Proteomic databases

PaxDbiP73033.

Interactioni

Protein-protein interaction databases

IntActiP73033. 1 interaction.
STRINGi1148.slr1755.

Structurei

3D structure databases

ProteinModelPortaliP73033.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni235 – 2362Substrate bindingUniRule annotation

Sequence similaritiesi

Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0240.
HOGENOMiHOG000246853.
InParanoidiP73033.
KOiK00057.
OMAiLECEYLI.
OrthoDBiEOG6JDWF4.
PhylomeDBiP73033.

Family and domain databases

Gene3Di1.10.1040.10. 1 hit.
3.40.50.720. 2 hits.
HAMAPiMF_00394. NAD_Glyc3P_dehydrog.
InterProiIPR008927. 6-PGluconate_DH_C-like.
IPR013328. DH_multihelical.
IPR006168. G3P_DH_NAD-dep.
IPR006109. G3P_DH_NAD-dep_C.
IPR011128. G3P_DH_NAD-dep_N.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
PANTHERiPTHR11728. PTHR11728. 1 hit.
PfamiPF07479. NAD_Gly3P_dh_C. 1 hit.
PF01210. NAD_Gly3P_dh_N. 2 hits.
[Graphical view]
PIRSFiPIRSF000114. Glycerol-3-P_dh. 1 hit.
SUPFAMiSSF48179. SSF48179. 1 hit.
PROSITEiPS00957. NAD_G3PDH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P73033-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSFANADTPP QVVVLGAGAW GSSLAYVLNN NDIPTQVWSR RSPQSLESMV
60 70 80 90 100
AGADVIVSAV SIKGVPSVAA RLEAMDLQRR TILVTATKGL DPETMTTPSQ
110 120 130 140 150
IWQAALPSQP IAVLSGPNLS KEIDQGLPAA TVVASSDQAA AEEIQTIFAA
160 170 180 190 200
DNFRVYTNND PLGTELGGTL KNVMAIAVGV CEGLGLGTNA KSALITRALP
210 220 230 240 250
EITRVGLHFG AQPDTFWGLA GLGDLLATCS SMLSRNYRVG YGLSKGQSLE
260 270 280 290 300
EILANLGGTA EGVNTTDVLI KIANREKIAV PITRQVYRLL HGKITPPQAV
310
EALMERELKA EFEDFDL
Length:317
Mass (Da):33,511
Last modified:June 1, 2001 - v2
Checksum:i1335A86E1B6E0935
GO

Sequence cautioni

The sequence BAA17053.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA17053.1. Different initiation.
PIRiS75139.
RefSeqiNP_440373.1. NC_000911.1.
YP_007450257.1. NC_020286.1.

Genome annotation databases

EnsemblBacteriaiBAA17053; BAA17053; BAA17053.
GeneIDi953673.
KEGGisyn:slr1755.
PATRICi23837904. VBISynSp132158_0521.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA17053.1 . Different initiation.
PIRi S75139.
RefSeqi NP_440373.1. NC_000911.1.
YP_007450257.1. NC_020286.1.

3D structure databases

ProteinModelPortali P73033.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi P73033. 1 interaction.
STRINGi 1148.slr1755.

Proteomic databases

PaxDbi P73033.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAA17053 ; BAA17053 ; BAA17053 .
GeneIDi 953673.
KEGGi syn:slr1755.
PATRICi 23837904. VBISynSp132158_0521.

Phylogenomic databases

eggNOGi COG0240.
HOGENOMi HOG000246853.
InParanoidi P73033.
KOi K00057.
OMAi LECEYLI.
OrthoDBi EOG6JDWF4.
PhylomeDBi P73033.

Enzyme and pathway databases

UniPathwayi UPA00940 .

Family and domain databases

Gene3Di 1.10.1040.10. 1 hit.
3.40.50.720. 2 hits.
HAMAPi MF_00394. NAD_Glyc3P_dehydrog.
InterProi IPR008927. 6-PGluconate_DH_C-like.
IPR013328. DH_multihelical.
IPR006168. G3P_DH_NAD-dep.
IPR006109. G3P_DH_NAD-dep_C.
IPR011128. G3P_DH_NAD-dep_N.
IPR016040. NAD(P)-bd_dom.
[Graphical view ]
PANTHERi PTHR11728. PTHR11728. 1 hit.
Pfami PF07479. NAD_Gly3P_dh_C. 1 hit.
PF01210. NAD_Gly3P_dh_N. 2 hits.
[Graphical view ]
PIRSFi PIRSF000114. Glycerol-3-P_dh. 1 hit.
SUPFAMi SSF48179. SSF48179. 1 hit.
PROSITEi PS00957. NAD_G3PDH. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / Kazusa.

Entry informationi

Entry nameiGPDA_SYNY3
AccessioniPrimary (citable) accession number: P73033
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1999
Last sequence update: June 1, 2001
Last modified: November 26, 2014
This is version 109 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families
  3. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

External Data

Dasty 3