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P72970 (Y1592_SYNY3) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 87. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized RNA pseudouridine synthase slr1592

EC=5.4.99.-
Alternative name(s):
RNA pseudouridylate synthase
RNA-uridine isomerase
Gene names
Ordered Locus Names:slr1592
OrganismSynechocystis sp. (strain PCC 6803 / Kazusa) [Reference proteome] [HAMAP]
Taxonomic identifier1111708 [NCBI]
Taxonomic lineageBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis

Protein attributes

Sequence length291 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

RNA uridine = RNA pseudouridine.

Sequence similarities

Belongs to the pseudouridine synthase RluA family.

Ontologies

Keywords
   Molecular functionIsomerase
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processpseudouridine synthesis

Inferred from electronic annotation. Source: InterPro

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: InterPro

pseudouridine synthase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 291291Uncharacterized RNA pseudouridine synthase slr1592
PRO_0000162746

Sequences

Sequence LengthMass (Da)Tools
P72970 [UniParc].

Last modified February 1, 1997. Version 1.
Checksum: D93D79A569920AE8

FASTA29133,096
        10         20         30         40         50         60 
MLDFYSQRYL HSERQAWQER IEQGQIEVDG KTVDPTYPLQ AGQTLTYWRS PWVEPEVPLQ 

        70         80         90        100        110        120 
LSVLHRDEDL WAIDKPSGLP VLPGGDFVYH TVLEQLKIQY PQESLFPLHR LGTGTSGLLL 

       130        140        150        160        170        180 
LGRSTLGRRE LSRQFREHIC RKIYRTVIGP CDLPEKFECH QAIGKIPYPQ LGYIYAASSH 

       190        200        210        220        230        240 
GKPAQSYGRI LARSPEKTWL EVEIRTGRPH QIRIHLASLG YPLLGDRLYG PGGVPINCRT 

       250        260        270        280        290 
ARPSDGGYTL HSYQLGFLHL HTQQAIKLTA PLPPELITPE VKTIALETEK H 

« Hide

References

[1]"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S. expand/collapse author list , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PCC 6803 / Kazusa.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000022 Genomic DNA. Translation: BAA16988.1.
PIRS74948.
RefSeqNP_440308.1. NC_000911.1.
YP_005650365.1. NC_017277.1.
YP_007450191.1. NC_020286.1.

3D structure databases

ProteinModelPortalP72970.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActP72970. 2 interactions.
STRING1148.slr1592.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAA16988; BAA16988; BAA16988.
GeneID12256055.
14615839.
953607.
KEGGsyn:slr1592.
syy:SYNGTS_0412.
syz:MYO_14170.
PATRIC23837754. VBISynSp132158_0446.

Phylogenomic databases

eggNOGCOG0564.
KOK06180.
OMAFTGRPHQ.
OrthoDBEOG6P070X.
PhylomeDBP72970.
ProtClustDBCLSK881040.

Family and domain databases

InterProIPR020103. PsdUridine_synth_cat_dom.
IPR006225. PsdUridine_synth_RluC/D.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamPF00849. PseudoU_synth_2. 1 hit.
[Graphical view]
SMARTSM00363. S4. 1 hit.
[Graphical view]
SUPFAMSSF55120. SSF55120. 1 hit.
TIGRFAMsTIGR00005. rluA_subfam. 1 hit.
PROSITEPS01129. PSI_RLU. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameY1592_SYNY3
AccessionPrimary (citable) accession number: P72970
Entry history
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: February 1, 1997
Last modified: April 16, 2014
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Synechocystis PCC 6803

Synechocystis (strain PCC 6803): entries and gene names

SIMILARITY comments

Index of protein domains and families