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P72970

- Y1592_SYNY3

UniProt

P72970 - Y1592_SYNY3

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Protein

Uncharacterized RNA pseudouridine synthase slr1592

Gene

slr1592

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

RNA uridine = RNA pseudouridine.

GO - Molecular functioni

  1. pseudouridine synthase activity Source: InterPro
  2. RNA binding Source: InterPro

GO - Biological processi

  1. pseudouridine synthesis Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Isomerase

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized RNA pseudouridine synthase slr1592 (EC:5.4.99.-)
Alternative name(s):
RNA pseudouridylate synthase
RNA-uridine isomerase
Gene namesi
Ordered Locus Names:slr1592
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 291291Uncharacterized RNA pseudouridine synthase slr1592PRO_0000162746Add
BLAST

Interactioni

Protein-protein interaction databases

IntActiP72970. 2 interactions.
STRINGi1148.slr1592.

Structurei

3D structure databases

ProteinModelPortaliP72970.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the pseudouridine synthase RluA family.Curated

Phylogenomic databases

eggNOGiCOG0564.
InParanoidiP72970.
KOiK06180.
OMAiWIWGPEP.
OrthoDBiEOG6P070X.
PhylomeDBiP72970.

Family and domain databases

InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR006225. PsdUridine_synth_RluC/D.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamiPF00849. PseudoU_synth_2. 1 hit.
[Graphical view]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
TIGRFAMsiTIGR00005. rluA_subfam. 1 hit.
PROSITEiPS01129. PSI_RLU. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P72970-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MLDFYSQRYL HSERQAWQER IEQGQIEVDG KTVDPTYPLQ AGQTLTYWRS
60 70 80 90 100
PWVEPEVPLQ LSVLHRDEDL WAIDKPSGLP VLPGGDFVYH TVLEQLKIQY
110 120 130 140 150
PQESLFPLHR LGTGTSGLLL LGRSTLGRRE LSRQFREHIC RKIYRTVIGP
160 170 180 190 200
CDLPEKFECH QAIGKIPYPQ LGYIYAASSH GKPAQSYGRI LARSPEKTWL
210 220 230 240 250
EVEIRTGRPH QIRIHLASLG YPLLGDRLYG PGGVPINCRT ARPSDGGYTL
260 270 280 290
HSYQLGFLHL HTQQAIKLTA PLPPELITPE VKTIALETEK H
Length:291
Mass (Da):33,096
Last modified:February 1, 1997 - v1
Checksum:iD93D79A569920AE8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA16988.1.
PIRiS74948.
RefSeqiNP_440308.1. NC_000911.1.
YP_005650365.1. NC_017277.1.
YP_007450191.1. NC_020286.1.

Genome annotation databases

EnsemblBacteriaiBAA16988; BAA16988; BAA16988.
GeneIDi953607.
KEGGisyn:slr1592.
PATRICi23837754. VBISynSp132158_0446.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA16988.1 .
PIRi S74948.
RefSeqi NP_440308.1. NC_000911.1.
YP_005650365.1. NC_017277.1.
YP_007450191.1. NC_020286.1.

3D structure databases

ProteinModelPortali P72970.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi P72970. 2 interactions.
STRINGi 1148.slr1592.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAA16988 ; BAA16988 ; BAA16988 .
GeneIDi 953607.
KEGGi syn:slr1592.
PATRICi 23837754. VBISynSp132158_0446.

Phylogenomic databases

eggNOGi COG0564.
InParanoidi P72970.
KOi K06180.
OMAi WIWGPEP.
OrthoDBi EOG6P070X.
PhylomeDBi P72970.

Family and domain databases

InterProi IPR020103. PsdUridine_synth_cat_dom.
IPR006225. PsdUridine_synth_RluC/D.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view ]
Pfami PF00849. PseudoU_synth_2. 1 hit.
[Graphical view ]
SMARTi SM00363. S4. 1 hit.
[Graphical view ]
SUPFAMi SSF55120. SSF55120. 1 hit.
TIGRFAMsi TIGR00005. rluA_subfam. 1 hit.
PROSITEi PS01129. PSI_RLU. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / Kazusa.

Entry informationi

Entry nameiY1592_SYNY3
AccessioniPrimary (citable) accession number: P72970
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: February 1, 1997
Last modified: November 26, 2014
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

External Data

Dasty 3