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P72872

- DUS2_SYNY3

UniProt

P72872 - DUS2_SYNY3

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Protein
Probable tRNA-dihydrouridine synthase 2
Gene
dus2, sll0926
Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs By similarity.

Cofactori

FAD By similarity.

GO - Molecular functioni

  1. flavin adenine dinucleotide binding Source: InterPro
  2. tRNA dihydrouridine synthase activity Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Biological processi

tRNA processing

Keywords - Ligandi

FAD, Flavoprotein

Names & Taxonomyi

Protein namesi
Recommended name:
Probable tRNA-dihydrouridine synthase 2 (EC:1.-.-.-)
Gene namesi
Name:dus2
Ordered Locus Names:sll0926
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 334334Probable tRNA-dihydrouridine synthase 2
PRO_0000162151Add
BLAST

Interactioni

Protein-protein interaction databases

IntActiP72872. 1 interaction.
STRINGi1148.sll0926.

Structurei

3D structure databases

ProteinModelPortaliP72872.

Family & Domainsi

Sequence similaritiesi

Belongs to the Dus family.

Phylogenomic databases

eggNOGiCOG0042.
HOGENOMiHOG000259834.
KOiK05539.
OMAiHMLGLRH.
OrthoDBiEOG6C8MTR.
PhylomeDBiP72872.

Family and domain databases

Gene3Di3.20.20.70. 1 hit.
InterProiIPR013785. Aldolase_TIM.
IPR004653. tRNA_dU_YjbN.
IPR001269. tRNA_hU_synthase.
IPR018517. tRNA_hU_synthase_CS.
[Graphical view]
PANTHERiPTHR11082. PTHR11082. 1 hit.
PfamiPF01207. Dus. 1 hit.
[Graphical view]
PIRSFiPIRSF006621. Dus. 1 hit.
TIGRFAMsiTIGR00742. yjbN. 1 hit.
PROSITEiPS01136. UPF0034. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P72872-1 [UniParc]FASTAAdd to Basket

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MTKIFADSSI NPLSVAPMMD HTDRHFRYFL RQLTRHTLLY TEMITAQAIL    50
HGDRQRLLNF SPEEKPVALQ LGGDDPQLLA ECARIGQDWG YDEINLNVGC 100
PSDRVQSGNF GACLMAQPDL VAQCVSAMQK AVEIPVTVKH RIGIDHRDSY 150
EDLVHFVEIV ANAGCQRFTV HARKAWLQGL SPKENRTIPP LRYEDVYQLK 200
KDFPQLLIEI NGGITQTEQI QQHLSHVDAV MVGRAAYENP YLFATVDRDI 250
YHKTNLVPSR AEIIERMLPY VEERLRHGDR LNQITRHLLS LFNGQPRAKF 300
WRRTLSDSTL LASAGPELLQ TALQAQKFPG VLVA 334
Length:334
Mass (Da):37,929
Last modified:February 1, 1997 - v1
Checksum:iE5AB3C5E98268719
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000022 Genomic DNA. Translation: BAA16888.1.
PIRiS74737.
RefSeqiNP_440208.1. NC_000911.1.
YP_005650265.1. NC_017277.1.
YP_007450091.1. NC_020286.1.

Genome annotation databases

EnsemblBacteriaiBAA16888; BAA16888; BAA16888.
GeneIDi953507.
KEGGisyn:sll0926.
syy:SYNGTS_0312.
syz:MYO_13150.
PATRICi23837546. VBISynSp132158_0344.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000022 Genomic DNA. Translation: BAA16888.1 .
PIRi S74737.
RefSeqi NP_440208.1. NC_000911.1.
YP_005650265.1. NC_017277.1.
YP_007450091.1. NC_020286.1.

3D structure databases

ProteinModelPortali P72872.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi P72872. 1 interaction.
STRINGi 1148.sll0926.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAA16888 ; BAA16888 ; BAA16888 .
GeneIDi 953507.
KEGGi syn:sll0926.
syy:SYNGTS_0312.
syz:MYO_13150.
PATRICi 23837546. VBISynSp132158_0344.

Phylogenomic databases

eggNOGi COG0042.
HOGENOMi HOG000259834.
KOi K05539.
OMAi HMLGLRH.
OrthoDBi EOG6C8MTR.
PhylomeDBi P72872.

Family and domain databases

Gene3Di 3.20.20.70. 1 hit.
InterProi IPR013785. Aldolase_TIM.
IPR004653. tRNA_dU_YjbN.
IPR001269. tRNA_hU_synthase.
IPR018517. tRNA_hU_synthase_CS.
[Graphical view ]
PANTHERi PTHR11082. PTHR11082. 1 hit.
Pfami PF01207. Dus. 1 hit.
[Graphical view ]
PIRSFi PIRSF006621. Dus. 1 hit.
TIGRFAMsi TIGR00742. yjbN. 1 hit.
PROSITEi PS01136. UPF0034. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / Kazusa.

Entry informationi

Entry nameiDUS2_SYNY3
AccessioniPrimary (citable) accession number: P72872
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: July 9, 2014
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

External Data

Dasty 3

Similar proteinsi