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Protein

Carbon dioxide concentrating mechanism protein CcmL

Gene

ccmL

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Carbon dioxide concentrating mechanism protein CcmL
Gene namesi
Name:ccmL
Ordered Locus Names:sll1030
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 100100Carbon dioxide concentrating mechanism protein CcmLPRO_0000089427Add
BLAST

Proteomic databases

PaxDbiP72759.

Interactioni

Protein-protein interaction databases

IntActiP72759. 5 interactions.
STRINGi1148.sll1030.

Structurei

Secondary structure

1
100
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi2 – 1110Combined sources
Beta strandi13 – 153Combined sources
Helixi17 – 193Combined sources
Beta strandi24 – 307Combined sources
Beta strandi36 – 4712Combined sources
Beta strandi54 – 596Combined sources
Helixi60 – 645Combined sources
Beta strandi75 – 8612Combined sources
Beta strandi88 – 947Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2QW7X-ray2.40A/B/C/D/E/F/G/H/I/J1-100[»]
ProteinModelPortaliP72759.
SMRiP72759. Positions 1-98.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP72759.

Family & Domainsi

Sequence similaritiesi

To E.coli and S.typhimurium CchB.Curated

Phylogenomic databases

eggNOGiCOG4576.
HOGENOMiHOG000287950.
InParanoidiP72759.
KOiK08697.
OMAiGAGINEW.
OrthoDBiEOG6091HS.
PhylomeDBiP72759.

Family and domain databases

Gene3Di2.40.50.220. 1 hit.
InterProiIPR023414. EutN-like_dom.
IPR004992. EutN_CcmL.
[Graphical view]
PfamiPF03319. EutN_CcmL. 1 hit.
[Graphical view]
ProDomiPD012510. EutN_CcmL. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF159133. SSF159133. 1 hit.

Sequencei

Sequence statusi: Complete.

P72759-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQLAKVLGTV VSTSKTPNLT GVKLLLVQFL DTKGQPLERY EVAGDVVGAG
60 70 80 90 100
LNEWVLVARG SAARKERGNG DRPLDAMVVG IIDTVNVASG SLYNKRDDGR
Length:100
Mass (Da):10,638
Last modified:February 1, 1997 - v1
Checksum:i745B80ED084E7680
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA16774.1.
PIRiS74622.
RefSeqiNP_440094.1. NC_000911.1.
YP_005650151.1. NC_017277.1.
YP_007449977.1. NC_020286.1.

Genome annotation databases

EnsemblBacteriaiBAA16774; BAA16774; BAA16774.
GeneIDi953393.
KEGGisyn:sll1030.
PATRICi23837276. VBISynSp132158_0212.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA16774.1.
PIRiS74622.
RefSeqiNP_440094.1. NC_000911.1.
YP_005650151.1. NC_017277.1.
YP_007449977.1. NC_020286.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2QW7X-ray2.40A/B/C/D/E/F/G/H/I/J1-100[»]
ProteinModelPortaliP72759.
SMRiP72759. Positions 1-98.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP72759. 5 interactions.
STRINGi1148.sll1030.

Proteomic databases

PaxDbiP72759.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA16774; BAA16774; BAA16774.
GeneIDi953393.
KEGGisyn:sll1030.
PATRICi23837276. VBISynSp132158_0212.

Phylogenomic databases

eggNOGiCOG4576.
HOGENOMiHOG000287950.
InParanoidiP72759.
KOiK08697.
OMAiGAGINEW.
OrthoDBiEOG6091HS.
PhylomeDBiP72759.

Miscellaneous databases

EvolutionaryTraceiP72759.

Family and domain databases

Gene3Di2.40.50.220. 1 hit.
InterProiIPR023414. EutN-like_dom.
IPR004992. EutN_CcmL.
[Graphical view]
PfamiPF03319. EutN_CcmL. 1 hit.
[Graphical view]
ProDomiPD012510. EutN_CcmL. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF159133. SSF159133. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / Kazusa.

Entry informationi

Entry nameiCCML_SYNY3
AccessioniPrimary (citable) accession number: P72759
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: March 4, 2015
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.