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P72703

- SPEB1_SYNY3

UniProt

P72703 - SPEB1_SYNY3

Protein

Agmatinase 1

Gene

speB1

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 88 (01 Oct 2014)
      Sequence version 1 (01 Feb 1997)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Agmatine + H2O = putrescine + urea.

    Cofactori

    Manganese.PROSITE-ProRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi121 – 1211ManganesePROSITE-ProRule annotation
    Metal bindingi145 – 1451ManganesePROSITE-ProRule annotation
    Metal bindingi147 – 1471ManganesePROSITE-ProRule annotation
    Metal bindingi149 – 1491ManganesePROSITE-ProRule annotation
    Metal bindingi228 – 2281ManganesePROSITE-ProRule annotation
    Metal bindingi230 – 2301ManganesePROSITE-ProRule annotation

    GO - Molecular functioni

    1. agmatinase activity Source: UniProtKB-EC
    2. metal ion binding Source: UniProtKB-KW

    GO - Biological processi

    1. putrescine biosynthetic process Source: UniProtKB-KW

    Keywords - Molecular functioni

    Hydrolase

    Keywords - Biological processi

    Putrescine biosynthesis

    Keywords - Ligandi

    Manganese, Metal-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Agmatinase 1 (EC:3.5.3.11)
    Alternative name(s):
    Agmatine ureohydrolase 1
    Short name:
    AUH 1
    Gene namesi
    Name:speB1
    Ordered Locus Names:sll0228
    OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
    Taxonomic identifieri1111708 [NCBI]
    Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
    ProteomesiUP000001425: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 306306Agmatinase 1PRO_0000173744Add
    BLAST

    Proteomic databases

    PaxDbiP72703.

    Interactioni

    Protein-protein interaction databases

    IntActiP72703. 1 interaction.
    STRINGi1148.sll0228.

    Structurei

    3D structure databases

    ProteinModelPortaliP72703.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the arginase family. Agmatinase subfamily.PROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiCOG0010.
    KOiK01480.
    OMAiLIPVPYD.
    OrthoDBiEOG6SR905.
    PhylomeDBiP72703.

    Family and domain databases

    Gene3Di3.40.800.10. 1 hit.
    InterProiIPR005925. Agmatinase-rel.
    IPR006035. Ureohydrolase.
    IPR023696. Ureohydrolase_domain.
    IPR020855. Ureohydrolase_Mn_BS.
    [Graphical view]
    PANTHERiPTHR11358. PTHR11358. 1 hit.
    PfamiPF00491. Arginase. 1 hit.
    [Graphical view]
    PIRSFiPIRSF036979. Arginase. 1 hit.
    TIGRFAMsiTIGR01230. agmatinase. 1 hit.
    PROSITEiPS01053. ARGINASE_1. 1 hit.
    PS51409. ARGINASE_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P72703-1 [UniParc]FASTAAdd to Basket

    « Hide

    MHSPNKFTSG PKQFLESEAI TSYADAAVVV VPIPYEATTS YRKGCEHGPE    50
    AVLEASDQLE AYDEELGTSP CHDLGIYTCA PLADSNKHPA LAGDAMVTEV 100
    CDGIAPFVED GKFVVAIGGE HAITTGVVRA MQRGTSEPFT VVQIDAHGDM 150
    RDKFEGSCHN HACVMRRVLE LGLPTLPIAI RAICQEEADL IREKNIPVFW 200
    AREMADNPNW INEAIASITT QKVFLTIDMD GFDPGFMPGV GTPEPGGLGW 250
    YEGLNFFRRL FQTKQVIGCD LMELAPVRGS VVSEFSTAKL AYKLMGYWGE 300
    SQRKKL 306
    Length:306
    Mass (Da):33,463
    Last modified:February 1, 1997 - v1
    Checksum:i114A8A313A0C4605
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000022 Genomic DNA. Translation: BAA16710.1.
    PIRiS74558.
    RefSeqiNP_440030.1. NC_000911.1.
    YP_005650087.1. NC_017277.1.
    YP_007449913.1. NC_020286.1.

    Genome annotation databases

    EnsemblBacteriaiBAA16710; BAA16710; BAA16710.
    GeneIDi953327.
    KEGGisyn:sll0228.
    syy:SYNGTS_0134.
    syz:MYO_11320.
    PATRICi23837138. VBISynSp132158_0144.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000022 Genomic DNA. Translation: BAA16710.1 .
    PIRi S74558.
    RefSeqi NP_440030.1. NC_000911.1.
    YP_005650087.1. NC_017277.1.
    YP_007449913.1. NC_020286.1.

    3D structure databases

    ProteinModelPortali P72703.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi P72703. 1 interaction.
    STRINGi 1148.sll0228.

    Proteomic databases

    PaxDbi P72703.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAA16710 ; BAA16710 ; BAA16710 .
    GeneIDi 953327.
    KEGGi syn:sll0228.
    syy:SYNGTS_0134.
    syz:MYO_11320.
    PATRICi 23837138. VBISynSp132158_0144.

    Phylogenomic databases

    eggNOGi COG0010.
    KOi K01480.
    OMAi LIPVPYD.
    OrthoDBi EOG6SR905.
    PhylomeDBi P72703.

    Family and domain databases

    Gene3Di 3.40.800.10. 1 hit.
    InterProi IPR005925. Agmatinase-rel.
    IPR006035. Ureohydrolase.
    IPR023696. Ureohydrolase_domain.
    IPR020855. Ureohydrolase_Mn_BS.
    [Graphical view ]
    PANTHERi PTHR11358. PTHR11358. 1 hit.
    Pfami PF00491. Arginase. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF036979. Arginase. 1 hit.
    TIGRFAMsi TIGR01230. agmatinase. 1 hit.
    PROSITEi PS01053. ARGINASE_1. 1 hit.
    PS51409. ARGINASE_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
      Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
      , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
      DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PCC 6803 / Kazusa.
    2. "Arginine catabolism in the cyanobacterium Synechocystis sp. strain PCC 6803 involves the urea cycle and arginase pathway."
      Quintero M.J., Muro-Pastor A.M., Herrero A., Flores E.
      J. Bacteriol. 182:1008-1015(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: FUNCTION.

    Entry informationi

    Entry nameiSPEB1_SYNY3
    AccessioniPrimary (citable) accession number: P72703
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 29, 2004
    Last sequence update: February 1, 1997
    Last modified: October 1, 2014
    This is version 88 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Caution

    Was originally annotated as an arginase by the genome sequencing project.Curated

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families
    2. Synechocystis PCC 6803
      Synechocystis (strain PCC 6803): entries and gene names

    External Data

    Dasty 3