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Protein

Agmatinase 1

Gene

speB1

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Agmatine + H2O = putrescine + urea.

Cofactori

Mn2+PROSITE-ProRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi121 – 1211ManganesePROSITE-ProRule annotation
Metal bindingi145 – 1451ManganesePROSITE-ProRule annotation
Metal bindingi147 – 1471ManganesePROSITE-ProRule annotation
Metal bindingi149 – 1491ManganesePROSITE-ProRule annotation
Metal bindingi228 – 2281ManganesePROSITE-ProRule annotation
Metal bindingi230 – 2301ManganesePROSITE-ProRule annotation

GO - Molecular functioni

  1. agmatinase activity Source: UniProtKB-EC
  2. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. putrescine biosynthetic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Biological processi

Putrescine biosynthesis

Keywords - Ligandi

Manganese, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Agmatinase 1 (EC:3.5.3.11)
Alternative name(s):
Agmatine ureohydrolase 1
Short name:
AUH 1
Gene namesi
Name:speB1
Ordered Locus Names:sll0228
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 306306Agmatinase 1PRO_0000173744Add
BLAST

Proteomic databases

PaxDbiP72703.

Interactioni

Protein-protein interaction databases

IntActiP72703. 1 interaction.
STRINGi1148.sll0228.

Structurei

3D structure databases

ProteinModelPortaliP72703.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the arginase family. Agmatinase subfamily.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG0010.
InParanoidiP72703.
KOiK01480.
OMAiCDVMELA.
OrthoDBiEOG6SR905.
PhylomeDBiP72703.

Family and domain databases

Gene3Di3.40.800.10. 1 hit.
InterProiIPR005925. Agmatinase-rel.
IPR006035. Ureohydrolase.
IPR023696. Ureohydrolase_domain.
IPR020855. Ureohydrolase_Mn_BS.
[Graphical view]
PANTHERiPTHR11358. PTHR11358. 1 hit.
PfamiPF00491. Arginase. 1 hit.
[Graphical view]
PIRSFiPIRSF036979. Arginase. 1 hit.
TIGRFAMsiTIGR01230. agmatinase. 1 hit.
PROSITEiPS01053. ARGINASE_1. 1 hit.
PS51409. ARGINASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P72703-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHSPNKFTSG PKQFLESEAI TSYADAAVVV VPIPYEATTS YRKGCEHGPE
60 70 80 90 100
AVLEASDQLE AYDEELGTSP CHDLGIYTCA PLADSNKHPA LAGDAMVTEV
110 120 130 140 150
CDGIAPFVED GKFVVAIGGE HAITTGVVRA MQRGTSEPFT VVQIDAHGDM
160 170 180 190 200
RDKFEGSCHN HACVMRRVLE LGLPTLPIAI RAICQEEADL IREKNIPVFW
210 220 230 240 250
AREMADNPNW INEAIASITT QKVFLTIDMD GFDPGFMPGV GTPEPGGLGW
260 270 280 290 300
YEGLNFFRRL FQTKQVIGCD LMELAPVRGS VVSEFSTAKL AYKLMGYWGE

SQRKKL
Length:306
Mass (Da):33,463
Last modified:February 1, 1997 - v1
Checksum:i114A8A313A0C4605
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA16710.1.
PIRiS74558.
RefSeqiNP_440030.1. NC_000911.1.
YP_005650087.1. NC_017277.1.
YP_007449913.1. NC_020286.1.

Genome annotation databases

EnsemblBacteriaiBAA16710; BAA16710; BAA16710.
KEGGisyn:sll0228.
PATRICi23837138. VBISynSp132158_0144.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA16710.1.
PIRiS74558.
RefSeqiNP_440030.1. NC_000911.1.
YP_005650087.1. NC_017277.1.
YP_007449913.1. NC_020286.1.

3D structure databases

ProteinModelPortaliP72703.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP72703. 1 interaction.
STRINGi1148.sll0228.

Proteomic databases

PaxDbiP72703.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA16710; BAA16710; BAA16710.
KEGGisyn:sll0228.
PATRICi23837138. VBISynSp132158_0144.

Phylogenomic databases

eggNOGiCOG0010.
InParanoidiP72703.
KOiK01480.
OMAiCDVMELA.
OrthoDBiEOG6SR905.
PhylomeDBiP72703.

Family and domain databases

Gene3Di3.40.800.10. 1 hit.
InterProiIPR005925. Agmatinase-rel.
IPR006035. Ureohydrolase.
IPR023696. Ureohydrolase_domain.
IPR020855. Ureohydrolase_Mn_BS.
[Graphical view]
PANTHERiPTHR11358. PTHR11358. 1 hit.
PfamiPF00491. Arginase. 1 hit.
[Graphical view]
PIRSFiPIRSF036979. Arginase. 1 hit.
TIGRFAMsiTIGR01230. agmatinase. 1 hit.
PROSITEiPS01053. ARGINASE_1. 1 hit.
PS51409. ARGINASE_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / Kazusa.
  2. "Arginine catabolism in the cyanobacterium Synechocystis sp. strain PCC 6803 involves the urea cycle and arginase pathway."
    Quintero M.J., Muro-Pastor A.M., Herrero A., Flores E.
    J. Bacteriol. 182:1008-1015(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION.

Entry informationi

Entry nameiSPEB1_SYNY3
AccessioniPrimary (citable) accession number: P72703
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 29, 2004
Last sequence update: February 1, 1997
Last modified: April 1, 2015
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Was originally annotated as an arginase by the genome sequencing project.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.