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Protein

Ribosome maturation factor RimP

Gene

rimP

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Required for maturation of 30S ribosomal subunits.UniRule annotation

GO - Biological processi

  1. ribosomal small subunit biogenesis Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Biological processi

Ribosome biogenesis

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome maturation factor RimPUniRule annotation
Gene namesi
Name:rimPUniRule annotation
Ordered Locus Names:slr0742
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425 Componenti: Chromosome

Subcellular locationi

  1. Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 151151Ribosome maturation factor RimPPRO_0000181942Add
BLAST

Interactioni

Protein-protein interaction databases

IntActiP72687. 1 interaction.
STRINGi1148.slr0742.

Structurei

3D structure databases

ProteinModelPortaliP72687.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RimP family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0779.
InParanoidiP72687.
KOiK09748.
OMAiFVSFRGF.
OrthoDBiEOG6NSGP3.
PhylomeDBiP72687.

Family and domain databases

Gene3Di2.30.30.180. 1 hit.
3.30.300.70. 1 hit.
HAMAPiMF_01077. RimP.
InterProiIPR003728. Ribosome_maturation_RimP.
IPR028998. RimP_C.
IPR028989. RimP_N.
[Graphical view]
PfamiPF02576. DUF150. 1 hit.
[Graphical view]
SUPFAMiSSF74942. SSF74942. 1 hit.
SSF75420. SSF75420. 1 hit.

Sequencei

Sequence statusi: Complete.

P72687-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTHPVIPDIL ALAQPIAEDL GLEVTDAVFQ TNKRPPVLRI DIRNLQQDTS
60 70 80 90 100
LNDCEAFSRS FEAQLEESSL IASAYVLEVS SPGISPYLAT ERDFIAFKGF
110 120 130 140 150
EVVVTSDNPH QGQSQWQGSL QGRDGEAVYL SIRGRTVAIP LTVGLTVRLP

H
Length:151
Mass (Da):16,560
Last modified:August 22, 2003 - v2
Checksum:i6087BAE6BE147AE7
GO

Sequence cautioni

The sequence BAA16694.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA16694.1. Different initiation.
PIRiS74542.
RefSeqiNP_440014.1. NC_000911.1.
YP_005650070.1. NC_017277.1.
YP_007449897.1. NC_020286.1.

Genome annotation databases

EnsemblBacteriaiBAA16694; BAA16694; BAA16694.
KEGGisyn:slr0742.
PATRICi23837102. VBISynSp132158_0126.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA16694.1. Different initiation.
PIRiS74542.
RefSeqiNP_440014.1. NC_000911.1.
YP_005650070.1. NC_017277.1.
YP_007449897.1. NC_020286.1.

3D structure databases

ProteinModelPortaliP72687.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP72687. 1 interaction.
STRINGi1148.slr0742.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA16694; BAA16694; BAA16694.
KEGGisyn:slr0742.
PATRICi23837102. VBISynSp132158_0126.

Phylogenomic databases

eggNOGiCOG0779.
InParanoidiP72687.
KOiK09748.
OMAiFVSFRGF.
OrthoDBiEOG6NSGP3.
PhylomeDBiP72687.

Family and domain databases

Gene3Di2.30.30.180. 1 hit.
3.30.300.70. 1 hit.
HAMAPiMF_01077. RimP.
InterProiIPR003728. Ribosome_maturation_RimP.
IPR028998. RimP_C.
IPR028989. RimP_N.
[Graphical view]
PfamiPF02576. DUF150. 1 hit.
[Graphical view]
SUPFAMiSSF74942. SSF74942. 1 hit.
SSF75420. SSF75420. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / Kazusa.

Entry informationi

Entry nameiRIMP_SYNY3
AccessioniPrimary (citable) accession number: P72687
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: August 22, 2003
Last modified: April 1, 2015
This is version 87 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.