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P72687 (RIMP_SYNY3) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 78. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Ribosome maturation factor RimP
Gene names
Name:rimP
Ordered Locus Names:slr0742
OrganismSynechocystis sp. (strain PCC 6803 / Kazusa) [Reference proteome] [HAMAP]
Taxonomic identifier1111708 [NCBI]
Taxonomic lineageBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis

Protein attributes

Sequence length151 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Required for maturation of 30S ribosomal subunits By similarity. HAMAP-Rule MF_01077

Subcellular location

Cytoplasm Potential HAMAP-Rule MF_01077.

Sequence similarities

Belongs to the RimP family.

Sequence caution

The sequence BAA16694.1 differs from that shown. Reason: Erroneous initiation.

Ontologies

Keywords
   Biological processRibosome biogenesis
   Cellular componentCytoplasm
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processribosome biogenesis

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 151151Ribosome maturation factor RimP HAMAP-Rule MF_01077
PRO_0000181942

Sequences

Sequence LengthMass (Da)Tools
P72687 [UniParc].

Last modified August 22, 2003. Version 2.
Checksum: 6087BAE6BE147AE7

FASTA15116,560
        10         20         30         40         50         60 
MTHPVIPDIL ALAQPIAEDL GLEVTDAVFQ TNKRPPVLRI DIRNLQQDTS LNDCEAFSRS 

        70         80         90        100        110        120 
FEAQLEESSL IASAYVLEVS SPGISPYLAT ERDFIAFKGF EVVVTSDNPH QGQSQWQGSL 

       130        140        150 
QGRDGEAVYL SIRGRTVAIP LTVGLTVRLP H 

« Hide

References

[1]"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S. expand/collapse author list , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PCC 6803 / Kazusa.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000022 Genomic DNA. Translation: BAA16694.1. Different initiation.
PIRS74542.
RefSeqNP_440014.1. NC_000911.1.
YP_005650070.1. NC_017277.1.
YP_007449897.1. NC_020286.1.

3D structure databases

ProteinModelPortalP72687.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActP72687. 1 interaction.
STRING1148.slr0742.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAA16694; BAA16694; BAA16694.
GeneID12253903.
14615538.
953240.
KEGGsyn:slr0742.
syy:SYNGTS_0117.
syz:MYO_11160.
PATRIC23837102. VBISynSp132158_0126.

Phylogenomic databases

eggNOGCOG0779.
KOK09748.
OMAEDCERMS.
OrthoDBEOG6NSGP3.
PhylomeDBP72687.
ProtClustDBPRK00092.

Family and domain databases

HAMAPMF_01077. RimP.
InterProIPR003728. Ribosome_maturation_RimP.
[Graphical view]
PfamPF02576. DUF150. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRIMP_SYNY3
AccessionPrimary (citable) accession number: P72687
Entry history
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: August 22, 2003
Last modified: April 16, 2014
This is version 78 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Synechocystis PCC 6803

Synechocystis (strain PCC 6803): entries and gene names

SIMILARITY comments

Index of protein domains and families