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P72687

- RIMP_SYNY3

UniProt

P72687 - RIMP_SYNY3

Protein

Ribosome maturation factor RimP

Gene

rimP

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 82 (01 Oct 2014)
      Sequence version 2 (22 Aug 2003)
      Previous versions | rss
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    • Comment

    Functioni

    Required for maturation of 30S ribosomal subunits.UniRule annotation

    GO - Biological processi

    1. ribosome biogenesis Source: UniProtKB-KW

    Keywords - Biological processi

    Ribosome biogenesis

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribosome maturation factor RimPUniRule annotation
    Gene namesi
    Name:rimPUniRule annotation
    Ordered Locus Names:slr0742
    OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
    Taxonomic identifieri1111708 [NCBI]
    Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
    ProteomesiUP000001425: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 151151Ribosome maturation factor RimPPRO_0000181942Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    IntActiP72687. 1 interaction.
    STRINGi1148.slr0742.

    Structurei

    3D structure databases

    ProteinModelPortaliP72687.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RimP family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0779.
    KOiK09748.
    OMAiEDCERMS.
    OrthoDBiEOG6NSGP3.
    PhylomeDBiP72687.

    Family and domain databases

    Gene3Di2.30.30.180. 1 hit.
    3.30.300.70. 1 hit.
    HAMAPiMF_01077. RimP.
    InterProiIPR003728. Ribosome_maturation_RimP.
    IPR028998. RimP_C.
    IPR028989. RimP_N.
    [Graphical view]
    PfamiPF02576. DUF150. 1 hit.
    [Graphical view]
    SUPFAMiSSF74942. SSF74942. 1 hit.
    SSF75420. SSF75420. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P72687-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTHPVIPDIL ALAQPIAEDL GLEVTDAVFQ TNKRPPVLRI DIRNLQQDTS    50
    LNDCEAFSRS FEAQLEESSL IASAYVLEVS SPGISPYLAT ERDFIAFKGF 100
    EVVVTSDNPH QGQSQWQGSL QGRDGEAVYL SIRGRTVAIP LTVGLTVRLP 150
    H 151
    Length:151
    Mass (Da):16,560
    Last modified:August 22, 2003 - v2
    Checksum:i6087BAE6BE147AE7
    GO

    Sequence cautioni

    The sequence BAA16694.1 differs from that shown. Reason: Erroneous initiation.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000022 Genomic DNA. Translation: BAA16694.1. Different initiation.
    PIRiS74542.
    RefSeqiNP_440014.1. NC_000911.1.
    YP_005650070.1. NC_017277.1.
    YP_007449897.1. NC_020286.1.

    Genome annotation databases

    EnsemblBacteriaiBAA16694; BAA16694; BAA16694.
    GeneIDi953240.
    KEGGisyn:slr0742.
    syy:SYNGTS_0117.
    syz:MYO_11160.
    PATRICi23837102. VBISynSp132158_0126.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000022 Genomic DNA. Translation: BAA16694.1 . Different initiation.
    PIRi S74542.
    RefSeqi NP_440014.1. NC_000911.1.
    YP_005650070.1. NC_017277.1.
    YP_007449897.1. NC_020286.1.

    3D structure databases

    ProteinModelPortali P72687.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi P72687. 1 interaction.
    STRINGi 1148.slr0742.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAA16694 ; BAA16694 ; BAA16694 .
    GeneIDi 953240.
    KEGGi syn:slr0742.
    syy:SYNGTS_0117.
    syz:MYO_11160.
    PATRICi 23837102. VBISynSp132158_0126.

    Phylogenomic databases

    eggNOGi COG0779.
    KOi K09748.
    OMAi EDCERMS.
    OrthoDBi EOG6NSGP3.
    PhylomeDBi P72687.

    Family and domain databases

    Gene3Di 2.30.30.180. 1 hit.
    3.30.300.70. 1 hit.
    HAMAPi MF_01077. RimP.
    InterProi IPR003728. Ribosome_maturation_RimP.
    IPR028998. RimP_C.
    IPR028989. RimP_N.
    [Graphical view ]
    Pfami PF02576. DUF150. 1 hit.
    [Graphical view ]
    SUPFAMi SSF74942. SSF74942. 1 hit.
    SSF75420. SSF75420. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
      Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
      , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
      DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PCC 6803 / Kazusa.

    Entry informationi

    Entry nameiRIMP_SYNY3
    AccessioniPrimary (citable) accession number: P72687
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 30, 2000
    Last sequence update: August 22, 2003
    Last modified: October 1, 2014
    This is version 82 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families
    2. Synechocystis PCC 6803
      Synechocystis (strain PCC 6803): entries and gene names

    External Data

    Dasty 3