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P72656

- RNE_SYNY3

UniProt

P72656 - RNE_SYNY3

Protein

Ribonuclease E/G-like protein

Gene

rne

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 88 (01 Oct 2014)
      Sequence version 1 (01 Feb 1997)
      Previous versions | rss
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    Functioni

    Cofactori

    Binds 1 Mg2+ ion per subunit.By similarity

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi296 – 2961Magnesium; catalyticBy similarity
    Metal bindingi339 – 3391Magnesium; catalyticBy similarity

    GO - Molecular functioni

    1. endonuclease activity Source: UniProtKB-KW
    2. metal ion binding Source: UniProtKB-KW
    3. ribonuclease activity Source: InterPro
    4. RNA binding Source: InterPro

    GO - Biological processi

    1. RNA processing Source: InterPro

    Keywords - Molecular functioni

    Endonuclease, Hydrolase, Nuclease

    Keywords - Ligandi

    Magnesium, Metal-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribonuclease E/G-like protein (EC:3.1.26.-)
    Short name:
    RNase E/G-like protein
    Gene namesi
    Name:rne
    Ordered Locus Names:slr1129
    OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
    Taxonomic identifieri1111708 [NCBI]
    Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
    ProteomesiUP000001425: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 674674Ribonuclease E/G-like proteinPRO_0000097378Add
    BLAST

    Proteomic databases

    PaxDbiP72656.

    Interactioni

    Protein-protein interaction databases

    IntActiP72656. 7 interactions.
    STRINGi1148.slr1129.

    Structurei

    3D structure databases

    ProteinModelPortaliP72656.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini35 – 11783S1 motifPROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the RNase E/G family.Curated
    Contains 1 S1 motif domain.PROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiCOG1530.
    HOGENOMiHOG000233194.
    KOiK08300.
    OMAiTNYEAAT.
    OrthoDBiEOG6PCPTH.
    PhylomeDBiP72656.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012340. NA-bd_OB-fold.
    IPR003029. Rbsml_prot_S1_RNA-bd_dom.
    IPR019307. RNA-bd_AU-1/RNase_E/G.
    IPR022967. RNA-binding_domain_S1.
    IPR004659. RNase_E/G.
    [Graphical view]
    PfamiPF10150. RNase_E_G. 1 hit.
    PF00575. S1. 1 hit.
    [Graphical view]
    SMARTiSM00316. S1. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00757. RNaseEG. 1 hit.
    PROSITEiPS50126. S1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P72656-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPKQIVIAEK HQVAAVFWKD QIQELVVSTG SQQVGDIYLG LVDNILPSID    50
    AAFINIGDTE KNGFIHVSDL GPVRLRRTAG SISELLSPQQ RVLVQVMKEP 100
    TGNKGPRLTG NISMPGRYMV LMPYGRGVNL SRRINREEER SRLRALAVLI 150
    KPPGMGLLVR TEAEDVPEDA IIEDLENLQK QWELVQQQAM TRSAPMLLDR 200
    DDDFIKRVLR DMYSSEVNRI VVDTPAGMKR IKQQLMNWDQ GRLPEGVLID 250
    CHRESLSILE YFRVNATIRE ALKPRVDLPS GGYIIIEPTE ALTVIDVNSG 300
    SFTHSANSRE TVLWTNYEAA TEIARQLKLR NIGGVIIIDF IDMDSHKDQL 350
    QLLEHFNRCL ETDKARPQIA QLTELGLVEL TRKRQGQNLY ELFGQPCPEC 400
    GGLGHLVELP GEKGFVSLSP TAVNSSIPPR LVEKPILSPP VAKVNDLPKK 450
    EEAKISSPLD LLFHPNYQEQ GDRDSNRRRR RRRGSEFSEK ENIKSVGISR 500
    SKGPSPSPTK EKVTGTAPPR RERPSRRVEK TLVPVDVAMT TLEQDIYARM 550
    GISPLIKTEY ADQDPRSFMV SVVTAGAALE GNTNGSGSLV NAVITTVDNG 600
    DNGDNVPSDG LTIVSEVTAP TPVIEQPREE TVEPEQVVLP QLDDETPAAP 650
    VAEESAPIET KKRPGRRRRR SSAE 674
    Length:674
    Mass (Da):74,944
    Last modified:February 1, 1997 - v1
    Checksum:i5C03F6087596C2B5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000022 Genomic DNA. Translation: BAA16658.1.
    PIRiS74506.
    RefSeqiNP_439978.1. NC_000911.1.
    YP_005650033.1. NC_017277.1.
    YP_007449861.1. NC_020286.1.

    Genome annotation databases

    EnsemblBacteriaiBAA16658; BAA16658; BAA16658.
    GeneIDi953139.
    KEGGisyn:slr1129.
    syy:SYNGTS_0080.
    syz:MYO_1800.
    PATRICi23837026. VBISynSp132158_0088.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000022 Genomic DNA. Translation: BAA16658.1 .
    PIRi S74506.
    RefSeqi NP_439978.1. NC_000911.1.
    YP_005650033.1. NC_017277.1.
    YP_007449861.1. NC_020286.1.

    3D structure databases

    ProteinModelPortali P72656.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi P72656. 7 interactions.
    STRINGi 1148.slr1129.

    Proteomic databases

    PaxDbi P72656.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAA16658 ; BAA16658 ; BAA16658 .
    GeneIDi 953139.
    KEGGi syn:slr1129.
    syy:SYNGTS_0080.
    syz:MYO_1800.
    PATRICi 23837026. VBISynSp132158_0088.

    Phylogenomic databases

    eggNOGi COG1530.
    HOGENOMi HOG000233194.
    KOi K08300.
    OMAi TNYEAAT.
    OrthoDBi EOG6PCPTH.
    PhylomeDBi P72656.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012340. NA-bd_OB-fold.
    IPR003029. Rbsml_prot_S1_RNA-bd_dom.
    IPR019307. RNA-bd_AU-1/RNase_E/G.
    IPR022967. RNA-binding_domain_S1.
    IPR004659. RNase_E/G.
    [Graphical view ]
    Pfami PF10150. RNase_E_G. 1 hit.
    PF00575. S1. 1 hit.
    [Graphical view ]
    SMARTi SM00316. S1. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00757. RNaseEG. 1 hit.
    PROSITEi PS50126. S1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
      Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
      , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
      DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PCC 6803 / Kazusa.

    Entry informationi

    Entry nameiRNE_SYNY3
    AccessioniPrimary (citable) accession number: P72656
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 15, 1998
    Last sequence update: February 1, 1997
    Last modified: October 1, 2014
    This is version 88 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families
    2. Synechocystis PCC 6803
      Synechocystis (strain PCC 6803): entries and gene names

    External Data

    Dasty 3