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P72656 (RNE_SYNY3) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 87. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Ribonuclease E/G-like protein

Short name=RNase E/G-like protein
EC=3.1.26.-
Gene names
Name:rne
Ordered Locus Names:slr1129
OrganismSynechocystis sp. (strain PCC 6803 / Kazusa) [Reference proteome] [HAMAP]
Taxonomic identifier1111708 [NCBI]
Taxonomic lineageBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis

Protein attributes

Sequence length674 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Binds 1 Mg2+ ion per subunit By similarity.

Sequence similarities

Belongs to the RNase E/G family.

Contains 1 S1 motif domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 674674Ribonuclease E/G-like protein
PRO_0000097378

Regions

Domain35 – 11783S1 motif

Sites

Metal binding2961Magnesium; catalytic By similarity
Metal binding3391Magnesium; catalytic By similarity

Sequences

Sequence LengthMass (Da)Tools
P72656 [UniParc].

Last modified February 1, 1997. Version 1.
Checksum: 5C03F6087596C2B5

FASTA67474,944
        10         20         30         40         50         60 
MPKQIVIAEK HQVAAVFWKD QIQELVVSTG SQQVGDIYLG LVDNILPSID AAFINIGDTE 

        70         80         90        100        110        120 
KNGFIHVSDL GPVRLRRTAG SISELLSPQQ RVLVQVMKEP TGNKGPRLTG NISMPGRYMV 

       130        140        150        160        170        180 
LMPYGRGVNL SRRINREEER SRLRALAVLI KPPGMGLLVR TEAEDVPEDA IIEDLENLQK 

       190        200        210        220        230        240 
QWELVQQQAM TRSAPMLLDR DDDFIKRVLR DMYSSEVNRI VVDTPAGMKR IKQQLMNWDQ 

       250        260        270        280        290        300 
GRLPEGVLID CHRESLSILE YFRVNATIRE ALKPRVDLPS GGYIIIEPTE ALTVIDVNSG 

       310        320        330        340        350        360 
SFTHSANSRE TVLWTNYEAA TEIARQLKLR NIGGVIIIDF IDMDSHKDQL QLLEHFNRCL 

       370        380        390        400        410        420 
ETDKARPQIA QLTELGLVEL TRKRQGQNLY ELFGQPCPEC GGLGHLVELP GEKGFVSLSP 

       430        440        450        460        470        480 
TAVNSSIPPR LVEKPILSPP VAKVNDLPKK EEAKISSPLD LLFHPNYQEQ GDRDSNRRRR 

       490        500        510        520        530        540 
RRRGSEFSEK ENIKSVGISR SKGPSPSPTK EKVTGTAPPR RERPSRRVEK TLVPVDVAMT 

       550        560        570        580        590        600 
TLEQDIYARM GISPLIKTEY ADQDPRSFMV SVVTAGAALE GNTNGSGSLV NAVITTVDNG 

       610        620        630        640        650        660 
DNGDNVPSDG LTIVSEVTAP TPVIEQPREE TVEPEQVVLP QLDDETPAAP VAEESAPIET 

       670 
KKRPGRRRRR SSAE 

« Hide

References

[1]"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S. expand/collapse author list , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PCC 6803 / Kazusa.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000022 Genomic DNA. Translation: BAA16658.1.
PIRS74506.
RefSeqNP_439978.1. NC_000911.1.
YP_005650033.1. NC_017277.1.
YP_007449861.1. NC_020286.1.

3D structure databases

ProteinModelPortalP72656.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActP72656. 7 interactions.
STRING1148.slr1129.

Proteomic databases

PaxDbP72656.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAA16658; BAA16658; BAA16658.
GeneID953139.
KEGGsyn:slr1129.
syy:SYNGTS_0080.
syz:MYO_1800.
PATRIC23837026. VBISynSp132158_0088.

Phylogenomic databases

eggNOGCOG1530.
HOGENOMHOG000233194.
KOK08300.
OMATNYEAAT.
OrthoDBEOG6PCPTH.
PhylomeDBP72656.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR019307. RNA-bd_AU-1/RNase_E/G.
IPR022967. RNA-binding_domain_S1.
IPR004659. RNase_E/G.
[Graphical view]
PfamPF10150. RNase_E_G. 1 hit.
PF00575. S1. 1 hit.
[Graphical view]
SMARTSM00316. S1. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00757. RNaseEG. 1 hit.
PROSITEPS50126. S1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRNE_SYNY3
AccessionPrimary (citable) accession number: P72656
Entry history
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: February 1, 1997
Last modified: July 9, 2014
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Synechocystis PCC 6803

Synechocystis (strain PCC 6803): entries and gene names

SIMILARITY comments

Index of protein domains and families