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P72656

- RNE_SYNY3

UniProt

P72656 - RNE_SYNY3

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Protein
Ribonuclease E/G-like protein
Gene
rne, slr1129
Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Cofactori

Binds 1 Mg2+ ion per subunit By similarity.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi296 – 2961Magnesium; catalytic By similarity
Metal bindingi339 – 3391Magnesium; catalytic By similarity

GO - Molecular functioni

  1. RNA binding Source: InterPro
  2. endonuclease activity Source: UniProtKB-KW
  3. metal ion binding Source: UniProtKB-KW
  4. ribonuclease activity Source: InterPro

GO - Biological processi

  1. RNA processing Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Endonuclease, Hydrolase, Nuclease

Keywords - Ligandi

Magnesium, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ribonuclease E/G-like protein (EC:3.1.26.-)
Short name:
RNase E/G-like protein
Gene namesi
Name:rne
Ordered Locus Names:slr1129
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 674674Ribonuclease E/G-like protein
PRO_0000097378Add
BLAST

Proteomic databases

PaxDbiP72656.

Interactioni

Protein-protein interaction databases

IntActiP72656. 7 interactions.
STRINGi1148.slr1129.

Structurei

3D structure databases

ProteinModelPortaliP72656.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini35 – 11783S1 motif
Add
BLAST

Sequence similaritiesi

Belongs to the RNase E/G family.
Contains 1 S1 motif domain.

Phylogenomic databases

eggNOGiCOG1530.
HOGENOMiHOG000233194.
KOiK08300.
OMAiTNYEAAT.
OrthoDBiEOG6PCPTH.
PhylomeDBiP72656.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR019307. RNA-bd_AU-1/RNase_E/G.
IPR022967. RNA-binding_domain_S1.
IPR004659. RNase_E/G.
[Graphical view]
PfamiPF10150. RNase_E_G. 1 hit.
PF00575. S1. 1 hit.
[Graphical view]
SMARTiSM00316. S1. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00757. RNaseEG. 1 hit.
PROSITEiPS50126. S1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P72656-1 [UniParc]FASTAAdd to Basket

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MPKQIVIAEK HQVAAVFWKD QIQELVVSTG SQQVGDIYLG LVDNILPSID    50
AAFINIGDTE KNGFIHVSDL GPVRLRRTAG SISELLSPQQ RVLVQVMKEP 100
TGNKGPRLTG NISMPGRYMV LMPYGRGVNL SRRINREEER SRLRALAVLI 150
KPPGMGLLVR TEAEDVPEDA IIEDLENLQK QWELVQQQAM TRSAPMLLDR 200
DDDFIKRVLR DMYSSEVNRI VVDTPAGMKR IKQQLMNWDQ GRLPEGVLID 250
CHRESLSILE YFRVNATIRE ALKPRVDLPS GGYIIIEPTE ALTVIDVNSG 300
SFTHSANSRE TVLWTNYEAA TEIARQLKLR NIGGVIIIDF IDMDSHKDQL 350
QLLEHFNRCL ETDKARPQIA QLTELGLVEL TRKRQGQNLY ELFGQPCPEC 400
GGLGHLVELP GEKGFVSLSP TAVNSSIPPR LVEKPILSPP VAKVNDLPKK 450
EEAKISSPLD LLFHPNYQEQ GDRDSNRRRR RRRGSEFSEK ENIKSVGISR 500
SKGPSPSPTK EKVTGTAPPR RERPSRRVEK TLVPVDVAMT TLEQDIYARM 550
GISPLIKTEY ADQDPRSFMV SVVTAGAALE GNTNGSGSLV NAVITTVDNG 600
DNGDNVPSDG LTIVSEVTAP TPVIEQPREE TVEPEQVVLP QLDDETPAAP 650
VAEESAPIET KKRPGRRRRR SSAE 674
Length:674
Mass (Da):74,944
Last modified:February 1, 1997 - v1
Checksum:i5C03F6087596C2B5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000022 Genomic DNA. Translation: BAA16658.1.
PIRiS74506.
RefSeqiNP_439978.1. NC_000911.1.
YP_005650033.1. NC_017277.1.
YP_007449861.1. NC_020286.1.

Genome annotation databases

EnsemblBacteriaiBAA16658; BAA16658; BAA16658.
GeneIDi953139.
KEGGisyn:slr1129.
syy:SYNGTS_0080.
syz:MYO_1800.
PATRICi23837026. VBISynSp132158_0088.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000022 Genomic DNA. Translation: BAA16658.1 .
PIRi S74506.
RefSeqi NP_439978.1. NC_000911.1.
YP_005650033.1. NC_017277.1.
YP_007449861.1. NC_020286.1.

3D structure databases

ProteinModelPortali P72656.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi P72656. 7 interactions.
STRINGi 1148.slr1129.

Proteomic databases

PaxDbi P72656.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAA16658 ; BAA16658 ; BAA16658 .
GeneIDi 953139.
KEGGi syn:slr1129.
syy:SYNGTS_0080.
syz:MYO_1800.
PATRICi 23837026. VBISynSp132158_0088.

Phylogenomic databases

eggNOGi COG1530.
HOGENOMi HOG000233194.
KOi K08300.
OMAi TNYEAAT.
OrthoDBi EOG6PCPTH.
PhylomeDBi P72656.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR019307. RNA-bd_AU-1/RNase_E/G.
IPR022967. RNA-binding_domain_S1.
IPR004659. RNase_E/G.
[Graphical view ]
Pfami PF10150. RNase_E_G. 1 hit.
PF00575. S1. 1 hit.
[Graphical view ]
SMARTi SM00316. S1. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00757. RNaseEG. 1 hit.
PROSITEi PS50126. S1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / Kazusa.

Entry informationi

Entry nameiRNE_SYNY3
AccessioniPrimary (citable) accession number: P72656
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: February 1, 1997
Last modified: July 9, 2014
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

External Data

Dasty 3

Similar proteinsi