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P72656

- RNE_SYNY3

UniProt

P72656 - RNE_SYNY3

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Protein

Ribonuclease E/G-like protein

Gene

rne

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Cofactori

Mg2+By similarityNote: Binds 1 Mg(2+) ion per subunit.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi296 – 2961Magnesium; catalyticBy similarity
Metal bindingi339 – 3391Magnesium; catalyticBy similarity

GO - Molecular functioni

  1. endonuclease activity Source: UniProtKB-KW
  2. metal ion binding Source: UniProtKB-KW
  3. ribonuclease activity Source: InterPro
  4. RNA binding Source: InterPro

GO - Biological processi

  1. RNA processing Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Endonuclease, Hydrolase, Nuclease

Keywords - Ligandi

Magnesium, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ribonuclease E/G-like protein (EC:3.1.26.-)
Short name:
RNase E/G-like protein
Gene namesi
Name:rne
Ordered Locus Names:slr1129
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 674674Ribonuclease E/G-like proteinPRO_0000097378Add
BLAST

Proteomic databases

PaxDbiP72656.

Interactioni

Protein-protein interaction databases

IntActiP72656. 7 interactions.
STRINGi1148.slr1129.

Structurei

3D structure databases

ProteinModelPortaliP72656.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini35 – 11783S1 motifPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the RNase E/G family.Curated
Contains 1 S1 motif domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG1530.
HOGENOMiHOG000233194.
InParanoidiP72656.
KOiK08300.
OMAiTNYEAAT.
OrthoDBiEOG6PCPTH.
PhylomeDBiP72656.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR019307. RNA-bd_AU-1/RNase_E/G.
IPR004659. RNase_E/G.
IPR022967. S1_dom.
[Graphical view]
PfamiPF10150. RNase_E_G. 1 hit.
PF00575. S1. 1 hit.
[Graphical view]
SMARTiSM00316. S1. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00757. RNaseEG. 1 hit.
PROSITEiPS50126. S1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P72656-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPKQIVIAEK HQVAAVFWKD QIQELVVSTG SQQVGDIYLG LVDNILPSID
60 70 80 90 100
AAFINIGDTE KNGFIHVSDL GPVRLRRTAG SISELLSPQQ RVLVQVMKEP
110 120 130 140 150
TGNKGPRLTG NISMPGRYMV LMPYGRGVNL SRRINREEER SRLRALAVLI
160 170 180 190 200
KPPGMGLLVR TEAEDVPEDA IIEDLENLQK QWELVQQQAM TRSAPMLLDR
210 220 230 240 250
DDDFIKRVLR DMYSSEVNRI VVDTPAGMKR IKQQLMNWDQ GRLPEGVLID
260 270 280 290 300
CHRESLSILE YFRVNATIRE ALKPRVDLPS GGYIIIEPTE ALTVIDVNSG
310 320 330 340 350
SFTHSANSRE TVLWTNYEAA TEIARQLKLR NIGGVIIIDF IDMDSHKDQL
360 370 380 390 400
QLLEHFNRCL ETDKARPQIA QLTELGLVEL TRKRQGQNLY ELFGQPCPEC
410 420 430 440 450
GGLGHLVELP GEKGFVSLSP TAVNSSIPPR LVEKPILSPP VAKVNDLPKK
460 470 480 490 500
EEAKISSPLD LLFHPNYQEQ GDRDSNRRRR RRRGSEFSEK ENIKSVGISR
510 520 530 540 550
SKGPSPSPTK EKVTGTAPPR RERPSRRVEK TLVPVDVAMT TLEQDIYARM
560 570 580 590 600
GISPLIKTEY ADQDPRSFMV SVVTAGAALE GNTNGSGSLV NAVITTVDNG
610 620 630 640 650
DNGDNVPSDG LTIVSEVTAP TPVIEQPREE TVEPEQVVLP QLDDETPAAP
660 670
VAEESAPIET KKRPGRRRRR SSAE
Length:674
Mass (Da):74,944
Last modified:February 1, 1997 - v1
Checksum:i5C03F6087596C2B5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA16658.1.
PIRiS74506.
RefSeqiNP_439978.1. NC_000911.1.
YP_005650033.1. NC_017277.1.
YP_007449861.1. NC_020286.1.

Genome annotation databases

EnsemblBacteriaiBAA16658; BAA16658; BAA16658.
GeneIDi953139.
KEGGisyn:slr1129.
PATRICi23837026. VBISynSp132158_0088.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA16658.1 .
PIRi S74506.
RefSeqi NP_439978.1. NC_000911.1.
YP_005650033.1. NC_017277.1.
YP_007449861.1. NC_020286.1.

3D structure databases

ProteinModelPortali P72656.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi P72656. 7 interactions.
STRINGi 1148.slr1129.

Proteomic databases

PaxDbi P72656.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAA16658 ; BAA16658 ; BAA16658 .
GeneIDi 953139.
KEGGi syn:slr1129.
PATRICi 23837026. VBISynSp132158_0088.

Phylogenomic databases

eggNOGi COG1530.
HOGENOMi HOG000233194.
InParanoidi P72656.
KOi K08300.
OMAi TNYEAAT.
OrthoDBi EOG6PCPTH.
PhylomeDBi P72656.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR019307. RNA-bd_AU-1/RNase_E/G.
IPR004659. RNase_E/G.
IPR022967. S1_dom.
[Graphical view ]
Pfami PF10150. RNase_E_G. 1 hit.
PF00575. S1. 1 hit.
[Graphical view ]
SMARTi SM00316. S1. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00757. RNaseEG. 1 hit.
PROSITEi PS50126. S1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / Kazusa.

Entry informationi

Entry nameiRNE_SYNY3
AccessioniPrimary (citable) accession number: P72656
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: February 1, 1997
Last modified: November 26, 2014
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

External Data

Dasty 3