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Protein

Ribonuclease E/G-like protein

Gene

rne

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Cofactori

Mg2+By similarityNote: Binds 1 Mg2+ ion per subunit.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi296Magnesium; catalyticBy similarity1
Metal bindingi339Magnesium; catalyticBy similarity1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Endonuclease, Hydrolase, Nuclease

Keywords - Ligandi

Magnesium, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ribonuclease E/G-like protein (EC:3.1.26.-)
Short name:
RNase E/G-like protein
Gene namesi
Name:rne
Ordered Locus Names:slr1129
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaSynechococcalesMerismopediaceaeSynechocystis
Proteomesi
  • UP000001425 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000973781 – 674Ribonuclease E/G-like proteinAdd BLAST674

Proteomic databases

PRIDEiP72656.

Interactioni

Protein-protein interaction databases

IntActiP72656. 7 interactors.

Structurei

3D structure databases

ProteinModelPortaliP72656.
SMRiP72656.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini35 – 117S1 motifPROSITE-ProRule annotationAdd BLAST83

Sequence similaritiesi

Belongs to the RNase E/G family.Curated
Contains 1 S1 motif domain.PROSITE-ProRule annotation

Phylogenomic databases

HOGENOMiHOG000233194.
InParanoidiP72656.
KOiK08300.
OMAiWTNYEAA.
PhylomeDBiP72656.

Family and domain databases

InterProiIPR012340. NA-bd_OB-fold.
IPR019307. RNA-bd_AU-1/RNase_E/G.
IPR004659. RNase_E/G.
IPR022967. S1_dom.
IPR003029. S1_domain.
[Graphical view]
PfamiPF10150. RNase_E_G. 1 hit.
[Graphical view]
SMARTiSM00316. S1. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00757. RNaseEG. 1 hit.
PROSITEiPS50126. S1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P72656-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKQIVIAEK HQVAAVFWKD QIQELVVSTG SQQVGDIYLG LVDNILPSID
60 70 80 90 100
AAFINIGDTE KNGFIHVSDL GPVRLRRTAG SISELLSPQQ RVLVQVMKEP
110 120 130 140 150
TGNKGPRLTG NISMPGRYMV LMPYGRGVNL SRRINREEER SRLRALAVLI
160 170 180 190 200
KPPGMGLLVR TEAEDVPEDA IIEDLENLQK QWELVQQQAM TRSAPMLLDR
210 220 230 240 250
DDDFIKRVLR DMYSSEVNRI VVDTPAGMKR IKQQLMNWDQ GRLPEGVLID
260 270 280 290 300
CHRESLSILE YFRVNATIRE ALKPRVDLPS GGYIIIEPTE ALTVIDVNSG
310 320 330 340 350
SFTHSANSRE TVLWTNYEAA TEIARQLKLR NIGGVIIIDF IDMDSHKDQL
360 370 380 390 400
QLLEHFNRCL ETDKARPQIA QLTELGLVEL TRKRQGQNLY ELFGQPCPEC
410 420 430 440 450
GGLGHLVELP GEKGFVSLSP TAVNSSIPPR LVEKPILSPP VAKVNDLPKK
460 470 480 490 500
EEAKISSPLD LLFHPNYQEQ GDRDSNRRRR RRRGSEFSEK ENIKSVGISR
510 520 530 540 550
SKGPSPSPTK EKVTGTAPPR RERPSRRVEK TLVPVDVAMT TLEQDIYARM
560 570 580 590 600
GISPLIKTEY ADQDPRSFMV SVVTAGAALE GNTNGSGSLV NAVITTVDNG
610 620 630 640 650
DNGDNVPSDG LTIVSEVTAP TPVIEQPREE TVEPEQVVLP QLDDETPAAP
660 670
VAEESAPIET KKRPGRRRRR SSAE
Length:674
Mass (Da):74,944
Last modified:February 1, 1997 - v1
Checksum:i5C03F6087596C2B5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA16658.1.
PIRiS74506.

Genome annotation databases

EnsemblBacteriaiBAA16658; BAA16658; BAA16658.
KEGGisyn:slr1129.
PATRICi23837026. VBISynSp132158_0088.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA16658.1.
PIRiS74506.

3D structure databases

ProteinModelPortaliP72656.
SMRiP72656.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP72656. 7 interactors.

Proteomic databases

PRIDEiP72656.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA16658; BAA16658; BAA16658.
KEGGisyn:slr1129.
PATRICi23837026. VBISynSp132158_0088.

Phylogenomic databases

HOGENOMiHOG000233194.
InParanoidiP72656.
KOiK08300.
OMAiWTNYEAA.
PhylomeDBiP72656.

Family and domain databases

InterProiIPR012340. NA-bd_OB-fold.
IPR019307. RNA-bd_AU-1/RNase_E/G.
IPR004659. RNase_E/G.
IPR022967. S1_dom.
IPR003029. S1_domain.
[Graphical view]
PfamiPF10150. RNase_E_G. 1 hit.
[Graphical view]
SMARTiSM00316. S1. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00757. RNaseEG. 1 hit.
PROSITEiPS50126. S1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRNE_SYNY3
AccessioniPrimary (citable) accession number: P72656
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 103 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.