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Protein

Ycf53-like protein

Gene

sll0558

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Ycf53-like protein
Gene namesi
Ordered Locus Names:sll0558
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
ProteomesiUP000001425 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 233233Ycf53-like proteinPRO_0000217384Add
BLAST

Proteomic databases

PaxDbiP72583.

Interactioni

Protein-protein interaction databases

IntActiP72583. 6 interactions.
STRINGi1148.sll0558.

Structurei

Secondary structure

1
233
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi2 – 1413Combined sources
Turni17 – 193Combined sources
Helixi20 – 289Combined sources
Helixi31 – 4515Combined sources
Helixi53 – 6412Combined sources
Helixi68 – 7710Combined sources
Helixi94 – 1018Combined sources
Helixi105 – 12016Combined sources
Helixi132 – 1354Combined sources
Helixi140 – 15213Combined sources
Turni153 – 1564Combined sources
Helixi160 – 16910Combined sources
Turni170 – 1723Combined sources
Helixi174 – 1818Combined sources
Helixi217 – 2237Combined sources
Helixi227 – 2304Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1Y6IX-ray1.78A1-233[»]
SMRiP72583. Positions 1-233.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP72583.

Family & Domainsi

Sequence similaritiesi

Belongs to the ycf53 family.Curated

Phylogenomic databases

eggNOGiNOG08265.
InParanoidiP72583.
OMAiRKWLYFT.
OrthoDBiEOG6FBWWT.
PhylomeDBiP72583.

Family and domain databases

InterProiIPR016024. ARM-type_fold.
IPR008629. GUN4-like.
[Graphical view]
PfamiPF05419. GUN4. 1 hit.
[Graphical view]
SUPFAMiSSF48371. SSF48371. 1 hit.

Sequencei

Sequence statusi: Complete.

P72583-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDNLTELSQ QLHDASEKKQ LTAIAALAEM GEGGQGILLD YLAKNVPLEK
60 70 80 90 100
PVLAVGNVYQ TLRNLEQETI TTQLQRNYPT GIFPLQSAQG IDYLPLQEAL
110 120 130 140 150
GSQDFETADE ITRDKLCELA GPGASQRQWL YFTEVEKFPA LDLHTINALW
160 170 180 190 200
WLHSNGNFGF SVQRRLWLAS GKEFTKLWPK IGWKSGNVWT RWPKGFTWDL
210 220 230
SAPQGHLPLL NQLRGVRVAE SLYRHPVWSQ YGW
Length:233
Mass (Da):26,465
Last modified:February 1, 1997 - v1
Checksum:iDE36B048AC83757C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA16582.1.
PIRiS74430.
RefSeqiNP_439902.1. NC_000911.1.
YP_005649957.1. NC_017277.1.
YP_007449785.1. NC_020286.1.

Genome annotation databases

EnsemblBacteriaiBAA16582; BAA16582; BAA16582.
KEGGisyn:sll0558.
PATRICi23836858. VBISynSp132158_0004.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA16582.1.
PIRiS74430.
RefSeqiNP_439902.1. NC_000911.1.
YP_005649957.1. NC_017277.1.
YP_007449785.1. NC_020286.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1Y6IX-ray1.78A1-233[»]
SMRiP72583. Positions 1-233.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP72583. 6 interactions.
STRINGi1148.sll0558.

Proteomic databases

PaxDbiP72583.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA16582; BAA16582; BAA16582.
KEGGisyn:sll0558.
PATRICi23836858. VBISynSp132158_0004.

Phylogenomic databases

eggNOGiNOG08265.
InParanoidiP72583.
OMAiRKWLYFT.
OrthoDBiEOG6FBWWT.
PhylomeDBiP72583.

Miscellaneous databases

EvolutionaryTraceiP72583.

Family and domain databases

InterProiIPR016024. ARM-type_fold.
IPR008629. GUN4-like.
[Graphical view]
PfamiPF05419. GUN4. 1 hit.
[Graphical view]
SUPFAMiSSF48371. SSF48371. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
    Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
    , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PCC 6803 / Kazusa.

Entry informationi

Entry nameiYC53L_SYNY3
AccessioniPrimary (citable) accession number: P72583
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1999
Last sequence update: February 1, 1997
Last modified: April 1, 2015
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.