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Protein

Ycf53-like protein

Gene

sll0558

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Ycf53-like protein
Gene namesi
Ordered Locus Names:sll0558
OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
Taxonomic identifieri1111708 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaSynechococcalesMerismopediaceaeSynechocystis
Proteomesi
  • UP000001425 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002173841 – 233Ycf53-like proteinAdd BLAST233

Proteomic databases

PRIDEiP72583.

Interactioni

Protein-protein interaction databases

IntActiP72583. 6 interactors.

Structurei

Secondary structure

1233
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi4 – 11Combined sources8
Turni17 – 19Combined sources3
Helixi20 – 28Combined sources9
Helixi31 – 45Combined sources15
Helixi53 – 64Combined sources12
Helixi68 – 77Combined sources10
Helixi94 – 101Combined sources8
Helixi105 – 120Combined sources16
Helixi122 – 127Combined sources6
Helixi132 – 136Combined sources5
Helixi140 – 152Combined sources13
Turni153 – 156Combined sources4
Helixi160 – 168Combined sources9
Turni169 – 172Combined sources4
Helixi174 – 180Combined sources7
Beta strandi183 – 185Combined sources3
Turni192 – 195Combined sources4
Helixi217 – 223Combined sources7
Helixi227 – 230Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1Y6IX-ray1.78A1-233[»]
4XKBX-ray1.50A1-233[»]
4XKCX-ray2.00A1-233[»]
ProteinModelPortaliP72583.
SMRiP72583.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP72583.

Family & Domainsi

Sequence similaritiesi

Belongs to the ycf53 family.Curated

Phylogenomic databases

InParanoidiP72583.
OMAiRKWLYFT.
PhylomeDBiP72583.

Family and domain databases

InterProiIPR016024. ARM-type_fold.
IPR008629. GUN4-like.
IPR032192. GUN4_N.
[Graphical view]
PfamiPF05419. GUN4. 1 hit.
PF16416. GUN4_N. 1 hit.
[Graphical view]
SUPFAMiSSF48371. SSF48371. 1 hit.

Sequencei

Sequence statusi: Complete.

P72583-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDNLTELSQ QLHDASEKKQ LTAIAALAEM GEGGQGILLD YLAKNVPLEK
60 70 80 90 100
PVLAVGNVYQ TLRNLEQETI TTQLQRNYPT GIFPLQSAQG IDYLPLQEAL
110 120 130 140 150
GSQDFETADE ITRDKLCELA GPGASQRQWL YFTEVEKFPA LDLHTINALW
160 170 180 190 200
WLHSNGNFGF SVQRRLWLAS GKEFTKLWPK IGWKSGNVWT RWPKGFTWDL
210 220 230
SAPQGHLPLL NQLRGVRVAE SLYRHPVWSQ YGW
Length:233
Mass (Da):26,465
Last modified:February 1, 1997 - v1
Checksum:iDE36B048AC83757C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA16582.1.
PIRiS74430.

Genome annotation databases

EnsemblBacteriaiBAA16582; BAA16582; BAA16582.
KEGGisyn:sll0558.
PATRICi23836858. VBISynSp132158_0004.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000022 Genomic DNA. Translation: BAA16582.1.
PIRiS74430.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1Y6IX-ray1.78A1-233[»]
4XKBX-ray1.50A1-233[»]
4XKCX-ray2.00A1-233[»]
ProteinModelPortaliP72583.
SMRiP72583.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP72583. 6 interactors.

Proteomic databases

PRIDEiP72583.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA16582; BAA16582; BAA16582.
KEGGisyn:sll0558.
PATRICi23836858. VBISynSp132158_0004.

Phylogenomic databases

InParanoidiP72583.
OMAiRKWLYFT.
PhylomeDBiP72583.

Miscellaneous databases

EvolutionaryTraceiP72583.

Family and domain databases

InterProiIPR016024. ARM-type_fold.
IPR008629. GUN4-like.
IPR032192. GUN4_N.
[Graphical view]
PfamiPF05419. GUN4. 1 hit.
PF16416. GUN4_N. 1 hit.
[Graphical view]
SUPFAMiSSF48371. SSF48371. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYC53L_SYNY3
AccessioniPrimary (citable) accession number: P72583
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1999
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Synechocystis PCC 6803
    Synechocystis (strain PCC 6803): entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.