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Protein

Nodulation protein J

Gene

nodJ

Organism
Rhizobium sp. (strain N33)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit encodes the transporter (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Nodulation, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Nodulation protein J
Gene namesi
Name:nodJ
OrganismiRhizobium sp. (strain N33)
Taxonomic identifieri103798 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei30 – 5021HelicalSequence analysisAdd
BLAST
Transmembranei67 – 8721HelicalSequence analysisAdd
BLAST
Transmembranei125 – 14521HelicalSequence analysisAdd
BLAST
Transmembranei147 – 16721HelicalSequence analysisAdd
BLAST
Transmembranei177 – 19721HelicalSequence analysisAdd
BLAST
Transmembranei236 – 25621HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 262262Nodulation protein JPRO_0000182990Add
BLAST

Interactioni

Subunit structurei

The complex is composed of two ATP-binding proteins (NodI) and two transmembrane proteins (NodJ).Curated

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini33 – 259227ABC transmembrane type-2PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 ABC transmembrane type-2 domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Family and domain databases

InterProiIPR013525. ABC_2_trans.
IPR000412. ABC_2_transport.
IPR005981. ABC_transptNodJ.
[Graphical view]
PANTHERiPTHR30413. PTHR30413. 1 hit.
PfamiPF01061. ABC2_membrane. 1 hit.
[Graphical view]
PIRSFiPIRSF006648. DrrB. 1 hit.
PRINTSiPR00164. ABC2TRNSPORT.
TIGRFAMsiTIGR01291. nodJ. 1 hit.
PROSITEiPS51012. ABC_TM2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P72336-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGKGFSAALP ANAWNWIAVW RRNYLAWTKV ALASILGNLA DPMIYLFGLG
60 70 80 90 100
TGLGMMVGRV EDASYPAFLA AGMVATSAMT ASTFETIYAT FPRMNEQRTW
110 120 130 140 150
EAILHTQLTL GDIVLGELVW ATTRAFLAGT AIAMVAVIAG YSAWSSVLYV
160 170 180 190 200
LPVIALTGLA FASLAMIVTA LAPSYHYFIF YQTLFLTPML FLSGAVFPVT
210 220 230 240 250
QLPSTFQHIA GILPLAHSID LIRPGMLDRP AGDIALHIGA LCIYAVVPFF
260
LSMVLLRRRL LR
Length:262
Mass (Da):28,469
Last modified:February 1, 1997 - v1
Checksum:iB5245F84B9CA4823
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U53327 Genomic DNA. Translation: AAB16899.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U53327 Genomic DNA. Translation: AAB16899.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

InterProiIPR013525. ABC_2_trans.
IPR000412. ABC_2_transport.
IPR005981. ABC_transptNodJ.
[Graphical view]
PANTHERiPTHR30413. PTHR30413. 1 hit.
PfamiPF01061. ABC2_membrane. 1 hit.
[Graphical view]
PIRSFiPIRSF006648. DrrB. 1 hit.
PRINTSiPR00164. ABC2TRNSPORT.
TIGRFAMsiTIGR01291. nodJ. 1 hit.
PROSITEiPS51012. ABC_TM2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiNODJ_RHIS3
AccessioniPrimary (citable) accession number: P72336
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: February 1, 1997
Last modified: November 11, 2015
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.