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Protein
Submitted name:

CooM

Gene

cooM

Organism
Rhodospirillum rubrum
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciMetaCyc:MONOMER-16442.

Protein family/group databases

TCDBi3.D.1.4.3. the h(+) or na(+)-translocating nadh dehydrogenase (ndh) family.

Names & Taxonomyi

Protein namesi
Submitted name:
CooMImported
Gene namesi
Name:cooMImported
OrganismiRhodospirillum rubrumImported
Taxonomic identifieri1085 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesRhodospirillaceaeRhodospirillum

Subcellular locationi

  • Membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei6 – 2318HelicalSequence analysisAdd
BLAST
Transmembranei35 – 5420HelicalSequence analysisAdd
BLAST
Transmembranei60 – 8122HelicalSequence analysisAdd
BLAST
Transmembranei101 – 11717HelicalSequence analysisAdd
BLAST
Transmembranei137 – 15620HelicalSequence analysisAdd
BLAST
Transmembranei177 – 19923HelicalSequence analysisAdd
BLAST
Transmembranei227 – 24620HelicalSequence analysisAdd
BLAST
Transmembranei253 – 27321HelicalSequence analysisAdd
BLAST
Transmembranei279 – 29820HelicalSequence analysisAdd
BLAST
Transmembranei310 – 32718HelicalSequence analysisAdd
BLAST
Transmembranei333 – 35119HelicalSequence analysisAdd
BLAST
Transmembranei363 – 38321HelicalSequence analysisAdd
BLAST
Transmembranei403 – 42624HelicalSequence analysisAdd
BLAST
Transmembranei447 – 46620HelicalSequence analysisAdd
BLAST
Transmembranei472 – 49524HelicalSequence analysisAdd
BLAST
Transmembranei515 – 53824HelicalSequence analysisAdd
BLAST
Transmembranei544 – 56320HelicalSequence analysisAdd
BLAST
Transmembranei575 – 59319HelicalSequence analysisAdd
BLAST
Transmembranei605 – 63329HelicalSequence analysisAdd
BLAST
Transmembranei654 – 67320HelicalSequence analysisAdd
BLAST
Transmembranei706 – 72318HelicalSequence analysisAdd
BLAST
Transmembranei730 – 75021HelicalSequence analysisAdd
BLAST
Transmembranei756 – 77621HelicalSequence analysisAdd
BLAST
Transmembranei788 – 80518HelicalSequence analysisAdd
BLAST
Transmembranei811 – 83020HelicalSequence analysisAdd
BLAST
Transmembranei842 – 86120HelicalSequence analysisAdd
BLAST
Transmembranei881 – 90020HelicalSequence analysisAdd
BLAST
Transmembranei938 – 95720HelicalSequence analysisAdd
BLAST
Transmembranei963 – 98624HelicalSequence analysisAdd
BLAST
Transmembranei998 – 101720HelicalSequence analysisAdd
BLAST
Transmembranei1058 – 107619HelicalSequence analysisAdd
BLAST
Transmembranei1096 – 111621HelicalSequence analysisAdd
BLAST
Transmembranei1137 – 116327HelicalSequence analysisAdd
BLAST
Transmembranei1189 – 120921HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi269796.Rru_A1420.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini7 – 150144Proton_antipo_MInterPro annotationAdd
BLAST
Domaini281 – 31434Proton_antipo_NInterPro annotationAdd
BLAST
Domaini328 – 627300Proton_antipo_MInterPro annotationAdd
BLAST
Domaini752 – 79140Proton_antipo_NInterPro annotationAdd
BLAST
Domaini805 – 1108304Proton_antipo_MInterPro annotationAdd
BLAST

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4108ETE. Bacteria.
COG0651. LUCA.
COG1007. LUCA.

Family and domain databases

InterProiIPR001750. ND/Mrp_mem.
IPR001516. Proton_antipo_N.
[Graphical view]
PfamiPF00361. Proton_antipo_M. 3 hits.
PF00662. Proton_antipo_N. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P72316-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADISALAWA GAALMLIGEG LALRNVRDLA RMLTYSTIAE IGYVLMGLGI
60 70 80 90 100
GTAAGETGAV MHLGYQAIMR ALVVVAAWHL IRRSGSSKLD ALVGSVERMP
110 120 130 140 150
FVSLMFGFGL FSVMGLSPFK GSFSKFVILY AAIENGYWGL AAVGTVASII
160 170 180 190 200
AAFYYIHTIQ QVCFQRQSHG ILGDKPIPFF QIPVGQLPIV VLALVTVVMS
210 220 230 240 250
LDPDPFLMLA ANAVGLPDHH GLPEFETIWD APVLLPYVGG FALFLFGRFS
260 270 280 290 300
AQARAVGAIA LATATLALVA ARLESGDLGG LFALIFAAIG LAVTVYSVGY
310 320 330 340 350
MKHGHGVNRY FFFLFLMIGS LIGVATTNHL GNFYLFWELM TWMSYLLVIH
360 370 380 390 400
EQTAKALKAG MKYFLICASG AYVMHFGILV LHAQLGTFEI SEIAPCIGTL
410 420 430 440 450
SPALAGVVLA TFLIGFMAKA GLFPLYSWLP EAHPVAPSSI SGPMSGILTK
460 470 480 490 500
AGILGMVKLL FGIFGVGALG QFGLFAGLSL PGAVLVALGG ITLLLGEVQA
510 520 530 540 550
YRQTDIKRLL AYSTLAQIGE ITMVLGVGTS LALAGGLFHV TNHAVMKTML
560 570 580 590 600
FFAVGALILR SAGRSLDDLK GLGKVMPFTG LCLGIGLLAI MGVPPFGGFV
610 620 630 640 650
SKFLMIYACV EAGQVGVAAV ILVGSVIGAL YYARVLRAVF FEPYTGPKVV
660 670 680 690 700
EAPLTMRIAL GALAGVVVFT GVYPDAALSV VMPVVETLSA RGGLPLAALP
710 720 730 740 750
PLRMEWSLAA LIAVVGAVVV YILGKRSTVV AGSLSVAVMA LALAGILIQS
760 770 780 790 800
GRYDLLSFWF AALIVVVGAI NLLYSIGYMA HGHAQNRFFF FFVMMIGGLL
810 820 830 840 850
GVTASDDLFN FFAFWEVMSS WTLYLVIIHE ETKDSLDEGT KYFIFNFVGA
860 870 880 890 900
SFLFLGVAIL AAKAGTFEMA LLPQAALSMP VGWLAVSAGL ILAGLLMKAA
910 920 930 940 950
QLPLRIDYQM HPAPAPTPVS GYISAVLLKV GPYGVLKIMV ALGAGGGLAR
960 970 980 990 1000
IAGLGAWMPD PLVVVQVIAA LTVLYAGAMA VVQNGVKRLL IYSTVSQLGY
1010 1020 1030 1040 1050
VLLGLSLGSA LGVAGGLMHF VNHMMLKDIL FLAAGCILAQ AHVHSLDDLG
1060 1070 1080 1090 1100
GLGRKMPITF GLFLFAGLSL SGIPPFNGFA SKWLIYQGAF QGGHYLLAMA
1110 1120 1130 1140 1150
ALMSSLFTLA AVLKFTHSAF LGPLSPAAAT MREAPPVMLI PMGLLAAGSV
1160 1170 1180 1190 1200
IVGVFPGVAL VPISRIQAAL GLPVIEASWL GGLPGPGGWH PLTLTLALGA
1210 1220 1230 1240 1250
VGLIGWLYCR DGYRHRAAST THSCGVSDIA ASAMHVPASG LYETPDRLIR
1260
KVLFAKTSPE GRAHD
Length:1,265
Mass (Da):132,999
Last modified:February 1, 1997 - v1
Checksum:iD681B9299A9E2C5E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U65510 Genomic DNA. Translation: AAC45116.1.
PIRiT51314.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U65510 Genomic DNA. Translation: AAC45116.1.
PIRiT51314.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi269796.Rru_A1420.

Protein family/group databases

TCDBi3.D.1.4.3. the h(+) or na(+)-translocating nadh dehydrogenase (ndh) family.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG4108ETE. Bacteria.
COG0651. LUCA.
COG1007. LUCA.

Enzyme and pathway databases

BioCyciMetaCyc:MONOMER-16442.

Family and domain databases

InterProiIPR001750. ND/Mrp_mem.
IPR001516. Proton_antipo_N.
[Graphical view]
PfamiPF00361. Proton_antipo_M. 3 hits.
PF00662. Proton_antipo_N. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Characterization of the region encoding the CO-induced hydrogenase of Rhodospirillum rubrum."
    Fox J.D., He Y., Shelver D., Roberts G.P., Ludden P.W.
    J. Bacteriol. 178:6200-6208(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: UR1Imported.
  2. Kerby R.L.
    Submitted (JUL-1996) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: UR1Imported.

Entry informationi

Entry nameiP72316_RHORU
AccessioniPrimary (citable) accession number: P72316
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: March 16, 2016
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.