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Protein
Submitted name:

CooM

Gene

cooM

Organism
Rhodospirillum rubrum
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciMetaCyc:MONOMER-16442.

Protein family/group databases

TCDBi3.D.1.4.3. the h(+) or na(+)-translocating nadh dehydrogenase (ndh) family.

Names & Taxonomyi

Protein namesi
Submitted name:
CooMImported
Gene namesi
Name:cooMImported
OrganismiRhodospirillum rubrumImported
Taxonomic identifieri1085 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesRhodospirillaceaeRhodospirillum

Subcellular locationi

  • Membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei6 – 23HelicalSequence analysisAdd BLAST18
Transmembranei35 – 54HelicalSequence analysisAdd BLAST20
Transmembranei60 – 81HelicalSequence analysisAdd BLAST22
Transmembranei101 – 117HelicalSequence analysisAdd BLAST17
Transmembranei137 – 156HelicalSequence analysisAdd BLAST20
Transmembranei177 – 199HelicalSequence analysisAdd BLAST23
Transmembranei227 – 246HelicalSequence analysisAdd BLAST20
Transmembranei253 – 273HelicalSequence analysisAdd BLAST21
Transmembranei279 – 298HelicalSequence analysisAdd BLAST20
Transmembranei310 – 327HelicalSequence analysisAdd BLAST18
Transmembranei333 – 351HelicalSequence analysisAdd BLAST19
Transmembranei363 – 383HelicalSequence analysisAdd BLAST21
Transmembranei403 – 426HelicalSequence analysisAdd BLAST24
Transmembranei447 – 466HelicalSequence analysisAdd BLAST20
Transmembranei472 – 495HelicalSequence analysisAdd BLAST24
Transmembranei515 – 538HelicalSequence analysisAdd BLAST24
Transmembranei544 – 563HelicalSequence analysisAdd BLAST20
Transmembranei575 – 593HelicalSequence analysisAdd BLAST19
Transmembranei605 – 633HelicalSequence analysisAdd BLAST29
Transmembranei654 – 673HelicalSequence analysisAdd BLAST20
Transmembranei706 – 723HelicalSequence analysisAdd BLAST18
Transmembranei730 – 750HelicalSequence analysisAdd BLAST21
Transmembranei756 – 776HelicalSequence analysisAdd BLAST21
Transmembranei788 – 805HelicalSequence analysisAdd BLAST18
Transmembranei811 – 830HelicalSequence analysisAdd BLAST20
Transmembranei842 – 861HelicalSequence analysisAdd BLAST20
Transmembranei881 – 900HelicalSequence analysisAdd BLAST20
Transmembranei938 – 957HelicalSequence analysisAdd BLAST20
Transmembranei963 – 986HelicalSequence analysisAdd BLAST24
Transmembranei998 – 1017HelicalSequence analysisAdd BLAST20
Transmembranei1058 – 1076HelicalSequence analysisAdd BLAST19
Transmembranei1096 – 1116HelicalSequence analysisAdd BLAST21
Transmembranei1137 – 1163HelicalSequence analysisAdd BLAST27
Transmembranei1189 – 1209HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi269796.Rru_A1420.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini7 – 150Proton_antipo_MInterPro annotationAdd BLAST144
Domaini281 – 314Proton_antipo_NInterPro annotationAdd BLAST34
Domaini328 – 627Proton_antipo_MInterPro annotationAdd BLAST300
Domaini752 – 791Proton_antipo_NInterPro annotationAdd BLAST40
Domaini805 – 1108Proton_antipo_MInterPro annotationAdd BLAST304

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4108ETE. Bacteria.
COG0651. LUCA.
COG1007. LUCA.

Family and domain databases

InterProiIPR001750. ND/Mrp_mem.
IPR001516. Proton_antipo_N.
[Graphical view]
PfamiPF00361. Proton_antipo_M. 3 hits.
PF00662. Proton_antipo_N. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P72316-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADISALAWA GAALMLIGEG LALRNVRDLA RMLTYSTIAE IGYVLMGLGI
60 70 80 90 100
GTAAGETGAV MHLGYQAIMR ALVVVAAWHL IRRSGSSKLD ALVGSVERMP
110 120 130 140 150
FVSLMFGFGL FSVMGLSPFK GSFSKFVILY AAIENGYWGL AAVGTVASII
160 170 180 190 200
AAFYYIHTIQ QVCFQRQSHG ILGDKPIPFF QIPVGQLPIV VLALVTVVMS
210 220 230 240 250
LDPDPFLMLA ANAVGLPDHH GLPEFETIWD APVLLPYVGG FALFLFGRFS
260 270 280 290 300
AQARAVGAIA LATATLALVA ARLESGDLGG LFALIFAAIG LAVTVYSVGY
310 320 330 340 350
MKHGHGVNRY FFFLFLMIGS LIGVATTNHL GNFYLFWELM TWMSYLLVIH
360 370 380 390 400
EQTAKALKAG MKYFLICASG AYVMHFGILV LHAQLGTFEI SEIAPCIGTL
410 420 430 440 450
SPALAGVVLA TFLIGFMAKA GLFPLYSWLP EAHPVAPSSI SGPMSGILTK
460 470 480 490 500
AGILGMVKLL FGIFGVGALG QFGLFAGLSL PGAVLVALGG ITLLLGEVQA
510 520 530 540 550
YRQTDIKRLL AYSTLAQIGE ITMVLGVGTS LALAGGLFHV TNHAVMKTML
560 570 580 590 600
FFAVGALILR SAGRSLDDLK GLGKVMPFTG LCLGIGLLAI MGVPPFGGFV
610 620 630 640 650
SKFLMIYACV EAGQVGVAAV ILVGSVIGAL YYARVLRAVF FEPYTGPKVV
660 670 680 690 700
EAPLTMRIAL GALAGVVVFT GVYPDAALSV VMPVVETLSA RGGLPLAALP
710 720 730 740 750
PLRMEWSLAA LIAVVGAVVV YILGKRSTVV AGSLSVAVMA LALAGILIQS
760 770 780 790 800
GRYDLLSFWF AALIVVVGAI NLLYSIGYMA HGHAQNRFFF FFVMMIGGLL
810 820 830 840 850
GVTASDDLFN FFAFWEVMSS WTLYLVIIHE ETKDSLDEGT KYFIFNFVGA
860 870 880 890 900
SFLFLGVAIL AAKAGTFEMA LLPQAALSMP VGWLAVSAGL ILAGLLMKAA
910 920 930 940 950
QLPLRIDYQM HPAPAPTPVS GYISAVLLKV GPYGVLKIMV ALGAGGGLAR
960 970 980 990 1000
IAGLGAWMPD PLVVVQVIAA LTVLYAGAMA VVQNGVKRLL IYSTVSQLGY
1010 1020 1030 1040 1050
VLLGLSLGSA LGVAGGLMHF VNHMMLKDIL FLAAGCILAQ AHVHSLDDLG
1060 1070 1080 1090 1100
GLGRKMPITF GLFLFAGLSL SGIPPFNGFA SKWLIYQGAF QGGHYLLAMA
1110 1120 1130 1140 1150
ALMSSLFTLA AVLKFTHSAF LGPLSPAAAT MREAPPVMLI PMGLLAAGSV
1160 1170 1180 1190 1200
IVGVFPGVAL VPISRIQAAL GLPVIEASWL GGLPGPGGWH PLTLTLALGA
1210 1220 1230 1240 1250
VGLIGWLYCR DGYRHRAAST THSCGVSDIA ASAMHVPASG LYETPDRLIR
1260
KVLFAKTSPE GRAHD
Length:1,265
Mass (Da):132,999
Last modified:February 1, 1997 - v1
Checksum:iD681B9299A9E2C5E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U65510 Genomic DNA. Translation: AAC45116.1.
PIRiT51314.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U65510 Genomic DNA. Translation: AAC45116.1.
PIRiT51314.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi269796.Rru_A1420.

Protein family/group databases

TCDBi3.D.1.4.3. the h(+) or na(+)-translocating nadh dehydrogenase (ndh) family.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG4108ETE. Bacteria.
COG0651. LUCA.
COG1007. LUCA.

Enzyme and pathway databases

BioCyciMetaCyc:MONOMER-16442.

Family and domain databases

InterProiIPR001750. ND/Mrp_mem.
IPR001516. Proton_antipo_N.
[Graphical view]
PfamiPF00361. Proton_antipo_M. 3 hits.
PF00662. Proton_antipo_N. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiP72316_RHORU
AccessioniPrimary (citable) accession number: P72316
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: March 16, 2016
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.